Rhodopseudomonas palustris HaA2: RPB_2008
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Entry
RPB_2008 CDS
T00321
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpb
Rhodopseudomonas palustris HaA2
Pathway
rpb03030
DNA replication
rpb03410
Base excision repair
rpb03420
Nucleotide excision repair
rpb03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpb00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPB_2008
03410 Base excision repair
RPB_2008
03420 Nucleotide excision repair
RPB_2008
03430 Mismatch repair
RPB_2008
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpb03032
]
RPB_2008
03400 DNA repair and recombination proteins [BR:
rpb03400
]
RPB_2008
Enzymes [BR:
rpb01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPB_2008
DNA replication proteins [BR:
rpb03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPB_2008
DNA repair and recombination proteins [BR:
rpb03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPB_2008
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPB_2008
MMR (mismatch excision repair)
DNA ligase
RPB_2008
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPB_2008
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
Motif
Other DBs
NCBI-ProteinID:
ABD06716
UniProt:
Q2IYJ4
LinkDB
All DBs
Position
2283424..2285568
Genome browser
AA seq
714 aa
AA seq
DB search
MTKAPKPAPDIATLTKAKAKVEAMRLRLEIERHNSAYYQHDAPTVSDAEYDALRRRLEAI
EAKFPELVSASSPTQTVGAAPARGFAKVQHAVPMLSLGNAFADDEVTEFVERVQRFLRLD
AVPSIVAEPKIDGLSLSLRYEHGELMRAATRGDGFTGEDVTANVRTIADIPTTLKAKTIP
AACELRGEVYMLKQDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFAY
AWGEMSDYPMDEPTQFKMLGWLKQAGFVVNPEITLCTSVDDALAFYRRIGEQRAALPYDI
DGVVYKVDRLDYQERLGFVSRSPRWAIAHKFAAEQATTVLEKIDIQVGRTGALTPVARLQ
PVTVGGVVVQNATLHNEDYIKGLGNDGSPLRDGVDIREGDTVVVQRAGDVIPQIVSVVLD
KRPADATPYHFPHKCPVCGSHAAREEGEAVWRCTGALICPAQAVERLKHFVSRLAFDIDG
LGEKQIVLFHERGWVKEPADIFTLQARNAALKLEDIEGYGETSVRNLFAAIDARRTIELH
RLIFALGIRHVGEGNAKLLARHYGTLDAFLAAMRAAAEGQTEEGNTSEAYQDLDNIAGIG
EVVAAAVVEFFAEPRNVAALDALLAELKDVLPAEQARRDTAVAGKTVVFTGSLTKFTRDE
AKAAAERLGAKVAGSVSKKTDYVVAGADAGSKLTKAKDLGVAVLTEDEWLALIS
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagcgccgaagcccgcccccgacatcgccaccctcaccaaagcgaaagccaag
gtggaggcgatgcggttgcggctcgagatcgagcggcacaacagcgcgtactaccagcac
gacgcgccgacggtttcggacgcggagtacgatgcgctgcggcgcaggctggaggcgatc
gaggcgaaattccccgagctcgtcagcgcgtcgtcgccgacacagacggtgggcgcggcg
ccggcgcgtggtttcgccaaggtgcagcacgcggtgccgatgctgtcgctcggcaacgcc
tttgccgacgacgaggtcacggaattcgtcgagcgcgtgcagcgtttcctccggctcgat
gcggtgccgtcgatcgtcgccgagccgaagatcgacgggctgtcgctgtcgctgcgttac
gagcacggcgaattgatgcgcgcggcgacgcggggcgacggcttcaccggcgaggacgtc
accgccaacgtccgcactatcgcggatattccgaccacgctgaaggcgaagacgatcccc
gccgcctgcgagctgcgcggcgaagtctacatgctgaagcaggatttcctcgcgctcaac
aagcggcaggaggaggccggcgacaccgtgttcgccaatccgcgcaattccgccgccggc
tcgctgcggcagaaggatgttgcgatcaccgcgtcgcggccgctgaaattcttcgcctat
gcgtggggcgagatgagcgactacccgatggacgagccgacccagttcaagatgctcggc
tggctgaaacaggccggcttcgtcgtcaatcccgagatcacgctgtgtaccagcgtcgac
gacgcgctcgcattctatcgccggatcggcgagcagcgcgcggcgctgccctacgacatc
gacggcgtggtctacaaggtcgatcggctcgactatcaggaacgcctcggcttcgtctcg
cgcagtccgcgctgggcgatcgcgcacaaattcgccgccgagcaggcgaccacggtgctg
gagaagatcgacatccaggtcggccgtaccggcgcgctcactccggtggcacgattgcag
ccggtgacggtgggtggcgtggtggtgcagaacgcgacgctgcacaacgaggactacatc
aagggtctcggcaatgacggctcgccgctgcgcgacggcgtcgacatccgcgagggcgac
accgtggtggtgcagcgcgccggcgacgtgattccgcagatcgtcagcgtcgtgctcgac
aagcggccggccgacgcgacgccctatcacttcccgcacaaatgcccggtgtgcggcagc
cacgcggcgcgcgaggagggcgaggcggtgtggcgttgcaccggcgcgctgatctgtccg
gcgcaggcggtggagcggctgaagcatttcgtctcgcggctggccttcgacatcgacggg
ctcggcgagaagcagatcgtgctgttccacgaacgcggatgggtgaaggaacccgccgac
atcttcacgctgcaggcgcgcaacgccgcgctgaagctcgaagatatcgaaggctatggc
gagacctcggtgcgcaatctgttcgcggcgatcgacgcgcggcgcaccatcgagctgcat
cgcttgatcttcgcgctcggcatccgccatgtcggcgagggcaatgcgaagctgctggcg
cggcactacggcacgctggatgccttcctggcggcgatgcgcgccgccgcggaagggcag
actgaggaaggcaatacgtcggaggcgtatcaggatctcgacaatatcgccggcatcggc
gaggtcgtcgctgccgctgtggtcgagttcttcgccgagccgcgcaacgtcgcggcgctc
gatgcgctgctggccgaactgaaggacgtgctgccggccgagcaggcgcggcgcgacacc
gccgtcgccggcaagaccgtggtgttcaccggatcgctgacgaaattcacccgcgacgaa
gccaaggcggcggcggagcgactgggcgccaaggtcgccggctcggtgtcgaagaagacc
gactacgtcgtcgccggcgcggacgccggatcgaagctcaccaaggcgaaagacctcggc
gtcgcggtgttgaccgaggacgagtggctggcgctgatctcttga
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