Rhodopseudomonas palustris BisB5: RPD_3381
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Entry
RPD_3381 CDS
T00345
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpd
Rhodopseudomonas palustris BisB5
Pathway
rpd03030
DNA replication
rpd03410
Base excision repair
rpd03420
Nucleotide excision repair
rpd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPD_3381
03410 Base excision repair
RPD_3381
03420 Nucleotide excision repair
RPD_3381
03430 Mismatch repair
RPD_3381
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpd03032
]
RPD_3381
03400 DNA repair and recombination proteins [BR:
rpd03400
]
RPD_3381
Enzymes [BR:
rpd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPD_3381
DNA replication proteins [BR:
rpd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPD_3381
DNA repair and recombination proteins [BR:
rpd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPD_3381
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPD_3381
MMR (mismatch excision repair)
DNA ligase
RPD_3381
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPD_3381
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
ABE40605
UniProt:
Q133Y4
LinkDB
All DBs
Position
complement(3753592..3755736)
Genome browser
AA seq
714 aa
AA seq
DB search
MISKSKTAAPDIDKLTKPKAKVELMRLRLAIEGHDKAYYQDDAPKIPDADYDALRRRLEA
IEAKFPELLSASSPSQTVGAAPARGFSKVQHAVPMLSLGNAFSDDEVGEFVERVQRFLKL
EDIPAIVAEPKIDGLSLSLRYENGTLVRAATRGDGFTGEDVTANVRTIADIPTTLKAKTI
PAACELRGEVYMLKHDFLALNKRQEEAGDTVFANPRNSAAGSLRQKDVAITASRPLKFFA
YAWGEMSDYPMESPTQHAMLAWLGDAGFTVNPEITLCHSVDDALAFYRRIGEQRAALPYD
IDGVVYKVDRLDYQARLGFVSRSPRWAIAHKFAAEQAVTVLEKIDIQVGRTGALTPVARL
QPVTVGGVVVQNATLHNEDYIKGVGSDGSPLRDGVDIREGDTVVVQRAGDVIPQIVTVVL
DKRPADLPAYKFPHKCPVCGSHAAREEGEAVWRCTGALICPAQAVERLKHFVSRLAFDID
GLGEKQIVLFHERGWVREPADIFTLKARNAELKLEDLEGYGETSVRNLFAAIDARRNIEL
NRLIFALGIRHVGEGNAKLLARHYGSIDVFLAAMRAAAEGQTPEGNTSEAYQDLDNIAGI
GDVVAEAVVEFFAEPRNVGALDALLREIEVLPVEQAKQDTAVAGKTVVFTGALTKFTRDE
AKAAAERLGAKVAGSVSKKTDYVVAGEDAGSKLTKARDLGVAVLTEDEWLALIG
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgatctcaaagtcgaagactgccgcccccgacatcgacaagctcaccaagccaaaggcg
aaggtggagctgatgcgtttgcggctggcgatcgaagggcacgacaaagcgtactatcag
gacgacgcgccgaaaattccggacgccgactacgacgcgttgcggcgtaggctggaggcg
atcgaggcgaaatttcccgaactgctcagcgcatcctcgccgagccagacggtcggcgcg
gcgccggcgcgcggcttttccaaggtgcagcacgcggtgccgatgctgtcgctcggcaac
gcgttttcggacgatgaggtcggggagttcgtcgagcgcgtgcagcgcttcctcaagctc
gaggacattccggcgatcgtcgccgagccgaagatcgacgggctgtcgctgtcgctgcgc
tacgagaatggaacgctggtgcgcgcggcgacgcgcggcgacggcttcaccggcgaggac
gtcaccgccaacgtccgcaccatcgcggacattccgaccacgctgaaggcgaagacaatc
cccgccgcctgcgagctgcgcggcgaagtctacatgctgaagcacgacttcctcgcgctc
aacaagcggcaggaagaggccggcgacaccgtgttcgccaatccgcgcaactccgccgcc
gggtcgctgcggcagaaggatgtcgcgatcacggcgtcgcggccgctgaagttcttcgcc
tatgcctggggcgagatgagcgactacccgatggaatcgccgacccaacacgccatgctg
gcttggcttggagacgcaggtttcacggtcaatcccgagatcacgctgtgtcacagcgtc
gacgatgcgctggcgttctatcgccggatcggcgagcagcgcgcggcgctgccctatgac
atcgacggcgtcgtctacaaggtcgaccggctcgactatcaggcgcggctcggattcgtg
tcgcgtagtccgcgctgggcgatcgcgcataaattcgccgccgagcaggcggtgacggtg
ctggagaagatcgacatccaggtcggccgcaccggcgcgctgactccggtggcgcggctg
cagccggtcaccgtcggcggcgtggtggtgcagaacgccacgctgcataacgaggactac
atcaagggcgtcggcagcgacgggtctccgttgcgcgacggcgtcgatatccgcgagggc
gacaccgtcgtcgtgcaacgcgccggcgacgtgattccgcagatcgtcactgtcgtgctc
gacaagcggccggcggatttgcccgcgtacaaattccctcacaaatgcccggtctgcggc
agtcatgccgcgcgcgaggagggcgaggcggtgtggcgctgcaccggcgcgctgatctgc
ccggcgcaggcggtggagcggctgaagcatttcgtctcacggctcgccttcgatatcgat
gggctcggcgagaaacagatcgtgctgtttcacgagcgcggctgggtcagggagccggcc
gacatctttacgctgaaggcgcgcaacgctgagctgaagctcgaagacctcgaaggctac
ggcgagacctcggtgcgcaatctgttcgcggcgatcgacgcacggcgcaacatcgaactg
aaccgcctgatcttcgcgctcggcatccgccacgtcggcgagggcaacgccaagctgctg
gcgcggcactatggctcgatcgatgtgttcctcgccgcgatgcgcgccgccgcggaaggc
cagacgccagagggcaatacgtcggaagcctatcaggacctcgacaacatcgccgggatc
ggcgacgtcgtcgccgaggccgtggtcgagttcttcgccgagccgcgcaatgtcggggcg
ctcgacgccttgctaagggagatcgaggtgctgccggtcgaacaggccaagcaggacact
gccgtcgccggcaagactgtggtgttcactggtgcgctcacgaaattcacccgcgacgag
gccaaggcggcggctgagcggctgggtgcgaaggtcgccggctcggtgtcgaagaagacc
gactacgtcgtcgccggcgaagacgccggctccaagctgaccaaggcgcgcgacctcggc
gtcgcggtgctgaccgaagacgagtggctggcgctgatcgggtga
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