Rhodopseudomonas palustris BisA53: RPE_2121
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Entry
RPE_2121 CDS
T00400
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpe
Rhodopseudomonas palustris BisA53
Pathway
rpe03030
DNA replication
rpe03410
Base excision repair
rpe03420
Nucleotide excision repair
rpe03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpe00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPE_2121
03410 Base excision repair
RPE_2121
03420 Nucleotide excision repair
RPE_2121
03430 Mismatch repair
RPE_2121
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpe03032
]
RPE_2121
03400 DNA repair and recombination proteins [BR:
rpe03400
]
RPE_2121
Enzymes [BR:
rpe01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPE_2121
DNA replication proteins [BR:
rpe03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPE_2121
DNA repair and recombination proteins [BR:
rpe03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPE_2121
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPE_2121
MMR (mismatch excision repair)
DNA ligase
RPE_2121
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPE_2121
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
DZR_2
DUF4796_N
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
ABJ06065
UniProt:
Q07PR9
LinkDB
All DBs
Position
2338594..2340786
Genome browser
AA seq
730 aa
AA seq
DB search
MRRPAPRNDSRSVLQMKSKSKTVPDVATLTKAKAKVELMRLALEIERHDKAYYQEDAPKV
SDADYDALRRRLEEIEHKFPELVSGASPSQKVGAAPARGFAKVQHAVPMLSLGNAFSDDE
VAEFLQRVRRFLNLGDEIPAIVAEPKIDGLSLSLRYEQGELVRAATRGDGSVGEDVTANV
RTLKDIPHTLKGNRIPAACELRGEVYMLKSDFLALNKKQEEAGEAPFANPRNSAAGSLRQ
KDVAITASRPLKFFAYAWGEFSGETPERTQHDMLGWLDHAGFVVNPEITLCHSVDDALVF
YRRIGEERAALPYDIDGVVYKVDRLDWQARLGFAGRAPRWAIAHKFAAEQATTILEKIEI
QVGRTGALTPVARLAPVTVGGVVVQNATLHNEDYIKGVGNDGQPLREGRDIRVGDTVIIQ
RAGDVIPQVVDVVLDKRPADAVPYEFPQACPVCGSHAVREDGEVVRRCTGALICPAQAVE
RLKHFVSRLAFDIDGLGEKQIELFHERGWVKEPVDIFTLKTRNATLKLEELEGYGETSVR
NLFAAIDARRTIELHRLIFALGIRHVGEGNAKLLARHYGTIDAFLGAMRAAAAGQTEEGN
TSEAYQDLDNIGGIGDIVAEAVVEFFAEERNVEALDALLGELDEVLPAAQVKRDSAVAGK
TVVFTGSLSKFTRDEAKAAAERLGAKVAGSVSKKTDFVVAGEDAGSKLTKARELGVSVLS
EDEWLALIQG
NT seq
2193 nt
NT seq
+upstream
nt +downstream
nt
ttgcgcaggcctgcgccccggaatgactcgcgtagtgttctacagatgaaatcgaaatcc
aagacggttcccgacgtcgccacgctcaccaaggccaaagccaaggtggagctgatgcgg
ctggcgctcgagatcgagcggcacgacaaggcgtactaccaggaagacgcgccgaaagtt
tcagacgccgactacgacgcgctgcggcggcggcttgaagagatcgagcataaatttccc
gagttggtgagcggcgcatcgccctcgcaaaaagtcggcgcggcgccggcgcgtggcttt
gccaaggtgcagcacgcggtgccgatgctgtcgctcggcaacgctttttccgacgacgag
gtcgcggagttcttgcagcgggtgcggcggttcctcaatctcggcgacgagataccggcg
atcgtcgccgagccgaagatcgacggtctgtcgctgtcgctgcgctacgagcagggcgag
ttggtgcgtgccgccacccgcggcgacggctctgtcggcgaggacgtcaccgccaatgtc
cgcacgctcaaggacataccgcacacgctgaagggcaacaggattcccgccgcctgcgaa
ttgcgcggcgaggtctatatgctcaagagcgatttcttggcgctcaacaaaaagcaggag
gaggccggcgaagcgccgttcgccaatccgcgcaattcggccgccggctcgctgcggcag
aaggacgtcgcgatcaccgcgtcgcggccgttaaaattcttcgcctatgcctggggcgaa
ttctctggagaaacgccggagaggacacagcacgacatgctcggctggctggatcacgcc
ggcttcgtggtgaatccagagatcacgctgtgccacagcgtcgatgatgcactggtcttc
tatcgcaggatcggcgaggagcgcgcggcgctgccctacgacatcgacggcgtggtctac
aaggtcgatcgcctcgactggcaggcgcggcttggttttgccggccgcgcgccgcgctgg
gcgatcgcgcataaattcgccgccgaacaggccaccacgattctggagaagatcgagatc
caggtcggccgcaccggggcgctgacgccggtggcgcggttggcgccggtgacggtcggc
ggcgtggtggtgcagaacgcgacgctgcacaatgaggactacatcaagggcgtcggcaat
gacggccagccgctgcgcgaaggccgcgacatccgcgtcggcgacaccgtgatcatccag
cgcgccggcgacgtgatcccgcaagtggtcgacgtggtgctcgacaagcggcccgccgac
gccgtgccttacgaatttccgcaggcctgcccggtgtgcggcagccacgcggtgcgcgag
gacggggaggtggtgcggcgctgcaccggcgcgctgatctgcccggcgcaggcggtggag
cggctgaagcactttgtgtcgcggctcgccttcgatatcgacgggctcggtgaaaaacag
attgaactgtttcacgagcgcggctgggtcaaggagccggtcgacatcttcacgctgaag
acgcgcaatgccacgctcaagctggaagaactcgaaggttacggcgagacctcggtgcgc
aatctgttcgcggcgatcgacgcccggcgcacaatcgaactgcaccgcctgatctttgcg
cttggcattcgtcatgtcggcgagggtaacgccaaactactggcgcggcactacggcacg
atcgacgcattcctgggcgcgatgcgcgccgccgctgctggacaaaccgaggagggcaat
acgtcggaagcgtatcaggacctcgacaacattggtggcattggtgacatcgtcgccgag
gcggtagttgagttcttcgctgaagagcgcaatgtcgaggcgcttgacgccttgcttgga
gaactcgacgaggtgttgccggcggcgcaggtcaagcgcgacagcgcggtcgccggcaag
accgtggtgttcaccggctcgctgagcaagttcacgcgcgacgaggccaaggccgcggcg
gagcggctcggcgccaaggtggcggggtcggtgtcgaagaagaccgattttgtcgtggcg
ggcgaggatgctggatcgaagctcaccaaggcgcgcgaactcggcgtcagcgtgctgagt
gaggacgagtggctggcgttgatccaagggtga
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