Ralstonia pickettii 12D: Rpic12D_1336 Help Entry Rpic12D_1336      CDS       T00925                                  Name (GenBank) DNA ligase, NAD-dependent   KO K01972   DNA ligase (NAD+) [EC:6.5.1.2] Organism rpf  Ralstonia pickettii 12D Pathway rpf03030   DNA replication rpf03410   Base excision repair rpf03420   Nucleotide excision repair rpf03430   Mismatch repair Brite KEGG Orthology (KO) [BR:rpf00001]  09120 Genetic Information Processing   09124 Replication and repair    03030 DNA replication     Rpic12D_1336    03410 Base excision repair     Rpic12D_1336    03420 Nucleotide excision repair     Rpic12D_1336    03430 Mismatch repair     Rpic12D_1336  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03032 DNA replication proteins [BR:rpf03032]     Rpic12D_1336    03400 DNA repair and recombination proteins [BR:rpf03400]     Rpic12D_1336 Enzymes [BR:rpf01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.2  DNA ligase (NAD+)      Rpic12D_1336 DNA replication proteins [BR:rpf03032]  Prokaryotic type   DNA Replication Elongation Factors    Elongation factors (bacterial)     Other elongation factors      Rpic12D_1336 DNA repair and recombination proteins [BR:rpf03400]  Prokaryotic type   SSBR (single strand breaks repair)    BER (base exicision repair)     DNA ligase      Rpic12D_1336    NER (nucleotide excision repair)     GGR (global genome repair) factors      Rpic12D_1336    MMR (mismatch excision repair)     DNA ligase      Rpic12D_1336   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     SHDIR (short-homology-dependent illegitimate recombination)      RecET pathway       Rpic12D_1336 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 Nlig-Ia PTCB-BRCT HHH DUF4796_N BRCT_2 Motif Other DBs NCBI-ProteinID:  ACS62625 UniProt:  C6BHL8 LinkDB All DBs Position 1:1413147..1415588 Genome browser AA seq 813 aa AA seqDB search MRKIAEPASGTTPEARAAWLRAELNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPE LKTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTPNGARAFDASVRRELGLDDTDP PVEYAAELKFDGLAISLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPVDGHV PDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA YGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDSLPFD IDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITPVARL VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPMDDVPGS DLFNPQQQPKYPPFELPKTCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM MDIEGLGERYIDNLVELDYVHGIADLYKLTLEDFLEMKRRADERDGVTPETVSAGKIATK WAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLLALPD VGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLEPAELYATLGVPKL TATRAKQLAVAAPTLAQLASVEPDQLAGLPADVTASLLEWLASHDHRAQLAKLDALRGEL LAAMPAEAAEEGVLAGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVVAGED AGSKLAKAEELNVKVLDEAGMLALLKKPAGDQA NT seq 2442 nt NT seq  +upstreamnt  +downstreamnt atgcgcaagatcgcagaacccgcgtccggtaccacgcccgaggcgcgggcggcttggctg cgtgccgagctgaaccgctacgcccacgagtactacgtgctcgaccagcccagcgtgccc gacgctgaatacgaccggctctatcgcgagctggaagcgctggaggccgaacatcccgaa ctgaagacacccgattcgcccacgctgcgggtcggtggcgccgtcctgcccgaatttgcg gcggtcaggcatgtcatccccatgctgtcgatccgcaccgagaccgacaccacccccaac ggcgcgcgcgcgttcgacgccagcgtacgccgcgagctgggccttgatgacaccgatccg cccgtggaatacgccgccgagctgaagttcgatggcctggcgatcagcctgcgctacgag cgcggttatctcgtgcaggccgccacacgtggcgatggcaccacgggcgaagacgtcacg cagaacatccgcacgatccgccagattccgctggggctgtcgccagttgatggccacgtg cccgacgtgctggaggtgcgcggcgaggtctacatgcgtcgcgacgacttcgagaagctc aacgcccgccagcgagagcgcggtgacaagaccttcgtcaacccgcgcaataccgcagcc ggtgccgtccgccagctcgatcctaagatggctgccgagcgcccgctgtcgttcttcgcc tatgggctgggcgaagtggccggctggaagggcatgcccggcacgcattccagcatgctc gacgtgctgcaggcgttcggtttcccggtcagtaatgaacgcgcggctgtggcgggcggt gaaggcctggtcagattccatgaggccatccgggccaagcgcgacagcttgccgttcgac atcgacggcgtcgtctacaaggtcaactcgctcgcgttgcagcgtgaactcggctttcgc tcacgtgagccgcgctgggcggttgcacacaaatatccggcgcaggaagcgctgaccacg gtcgaatccattgacgtgcaagtcggccgaacgggcgccatcacgccggtggcgcggctg gtgccggtgtttgttggcggggtaacggtcaccaatgcgacgctgcacaacgaagatgaa gtgcgccgcaaggatgtacgcgtgggcgacaccgtgatcgtgcggcgcgcgggtgacgtg attcccgaggtggtgagtgtggtgcttgatcgccgcccaatggatgacgtcccgggcagc gacttgttcaatccgcagcagcagcccaagtacccgccattcgaactgccgaagacgtgc ccggtttgcggctcgcacgtcgtgcgcgaagagggtgaggcggtggcccgttgctccggg gggctgttctgctcggcccagcgcaaggaggcgatccgccactttgccggtcgccgcatg atggacatcgaaggcctgggcgagcgttacattgacaacctggtcgagttggactacgtg cacggcattgccgacctgtacaagctcacgctcgaagattttctggagatgaagcgccgt gcggacgaacgtgatggcgtgacgcccgagacggtttccgcaggcaagatcgccaccaag tgggccgagaatctgctggagggcatccaggccagcaagacgcctccgctggcgcgcttc ctgtttgcgctgggcattcgccacgtgggcgagtcgaccgccaagacgcttgccgactgg ctcggcagcctggccatgatccggcgtgcgcctgcgccgctgctgctggcgctgcccgat gtgggtgccacggtggctgaagccatcgccgatttctttgccgagccgaagaaccagcag gcgctcgatgcgctgctcgaagccggtgttgcaccgcaaggcgagcatgcgcccaacgcg aagctgcgcgagaagctggagccggccgaactgtacgccacgctgggcgtgcccaagctg accgccacgcgcgcaaagcaattggccgtggcagcgccaacgcttgcccagctcgccagc gttgagcccgatcagttggctggcctgcccgcggatgtgactgcatcgctgctcgaatgg ctcgcctcgcacgaccatcgcgcgcaactggcgaagctcgacgcgctgcgcggcgagttg ctcgctgccatgcctgctgaggccgccgaagaaggcgtgctggccggcaagacagtcgtt ttgaccggcacattgccgaacctcacgcgtgacgaagccaaggccatgctggaagcagca ggcgccaaggtatcgggttcggtgtcgaaaaagaccgactacgttgtcgccggagaagat gccggcagcaagctcgccaaagccgaagaattgaacgtgaaggttctggacgaagcgggt atgctcgcgctgttaaaaaaaccggcgggagaccaggcatga

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