Roseovarius phycicola: RZ517_09995
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Entry
RZ517_09995 CDS
T10600
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rphc Roseovarius phycicola
Pathway
rphc03030
DNA replication
rphc03410
Base excision repair
rphc03420
Nucleotide excision repair
rphc03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RZ517_09995 (ligA)
03410 Base excision repair
RZ517_09995 (ligA)
03420 Nucleotide excision repair
RZ517_09995 (ligA)
03430 Mismatch repair
RZ517_09995 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphc03032
]
RZ517_09995 (ligA)
03400 DNA repair and recombination proteins [BR:
rphc03400
]
RZ517_09995 (ligA)
Enzymes [BR:
rphc01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RZ517_09995 (ligA)
DNA replication proteins [BR:
rphc03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RZ517_09995 (ligA)
DNA repair and recombination proteins [BR:
rphc03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RZ517_09995 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RZ517_09995 (ligA)
MMR (mismatch excision repair)
DNA ligase
RZ517_09995 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RZ517_09995 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
DNA_ligase_ZBD
HHH_2
PTCB-BRCT
HHH_5
Motif
Other DBs
NCBI-ProteinID:
WWR45147
LinkDB
All DBs
Position
1965926..1968052
Genome browser
AA seq
708 aa
AA seq
DB search
MAQNVAVDQLNDAEAKAELTRLADEIARANAAYHRDDAPDISDAAFDALKARNLAIEERF
PHLKRADSPSEQVGAAPAEGFAKITHAVRMLSLSNAFDAEDIADFDDRIRRYLGLGANAP
LAYTAEPKIDGLSLSLRYEEGRLVQAATRGDGAVGENVTANARTIADIPEEITGAPDILE
VRGEVYMSHADFESLNVRQAEAGSKTFANPRNAAAGSLRQLDSNITKTRPLRFFAYAWGE
ISAPLADTQMGAIERLDQLGFTTNPLTRLCDGTSDMLAHYATIEQQRAGLGYDIDGVVYK
VNDLDLQRRLGFRSTTPRWATAHKFPAELAWTRLEAIDIQVGRTGALSPVARLQPVTVGG
VVVSNATLHNEDYITGLDSKGQSIRDGKDIRVGDWVQVYRAGDVIPKVADVDLGKRPKDA
APYEFTKVCPECGSDAIREEGDAVRRCTGGLICPAQAVENLKHFVSRAAFDIEGLGAKQV
EMFYRDDQLPVKEPADIFTLATRDASNLSKLANRDGWGAKSAENLFQAIEDKRSIHFGRL
LFALGIRHVGEQASNLIARTYGAWSEFTAAMDAAAGQDGPEWERLLGIDGVGEVMARSLV
TAFAQGEERASIDRLTAHLDVEMAQAPSTGNSPVAGKTVVFTGTLEKMTRAEAKARAEAL
GAKVSGSVSAKTDLVVAGPGAGSKAKKAESLGIEMIDEDGWLDLIGEA
NT seq
2127 nt
NT seq
+upstream
nt +downstream
nt
atggcgcaaaacgttgcggtggatcagctcaacgacgccgaggccaaggcagagctgacg
cgtctggccgatgaaatcgcccgagccaatgccgcctatcatcgcgatgatgcgcctgac
atctcggacgccgcatttgacgcgctcaaggcgcgcaatctggccatcgaagagcgtttt
ccccatctcaaacgcgccgacagcccgagcgaacaagtcggcgcagccccggccgaaggc
ttcgccaagatcacccatgcggtgcgcatgctcagcctctcaaacgcctttgacgcagaa
gatatcgctgattttgatgatcgtatccggcgctatctggggctaggcgcgaatgcaccg
ctggcttacaccgccgagccaaagatcgacgggctgagcctgtcgctgcgctatgaggaa
gggcggctggtacaggcggcgacgcgcggggatggcgctgtgggcgaaaacgttactgcc
aatgctcgcacaatcgcggatatccccgaggagatcaccggcgcgcctgatattcttgaa
gtgcgcggcgaggtttatatgagccatgccgatttcgagtcgctcaatgtgcggcaggca
gaagcggggagcaagaccttcgccaatccacgcaacgctgcggccgggtcactgcggcag
ttggattccaatatcaccaaaacccggcctctacggttctttgcctatgcctggggcgag
atttccgcgccgctggccgacacgcaaatgggtgcgattgagaggttggatcagctcggc
tttaccaccaacccgctaacgcggctctgcgatggcacatctgatatgctcgcgcattac
gccactatcgaacaacagcgcgccggcctcggctatgacattgacggtgtggtttacaag
gtgaacgaccttgacctacagcgccgccttggctttcgctccaccacaccccgctgggcc
acggcgcataaatttcccgccgaactggcctggacccggctagaggccatcgacattcag
gtgggccgcaccggcgcgctctctccggtggcgcggctgcagcccgtcacggtgggcggc
gtggtggtcagcaacgccacccttcataatgaggactacatcacgggcctcgacagcaag
gggcagagcattcgggacggcaaggatatccgcgtaggcgactgggtgcaggtctaccgc
gccggtgacgtgatcccgaaagtggccgatgtggacttgggcaaacggcccaaggatgcc
gcgccctacgagtttacgaaggtttgccccgaatgcggctctgacgcgatccgggaagaa
ggggacgccgtgcgccgttgcaccggcggtctcatttgcccggctcaagcggtggagaac
cttaagcatttcgtcagccgcgccgcctttgacatcgaagggctgggagccaagcaggtg
gagatgttctatcgcgacgatcagctgcccgtaaaagagcctgctgacatcttcactctg
gctacacgcgatgcgtccaacctgtcgaaactggccaatcgcgatggctggggcgcaaag
agcgccgagaacttgtttcaggctattgaagacaagcgcagcatccactttggccgtctg
ctctttgctttgggcatccgccatgtcggcgaacaggccagcaacctcattgcgcgcacc
tatggcgcgtggagcgagttcaccgccgcgatggatgccgctgcgggtcaggacggcccg
gaatgggagcggctcttggggattgatggcgtcggagaggtcatggcgcgcagtctggtc
acggcctttgctcagggcgaagaacgggccagcatcgaccggttgaccgcgcatctggat
gttgagatggcgcaagcgcccagcacgggtaacagccctgtggcaggcaaaacggttgtt
ttcaccggaacacttgaaaaaatgacccgcgccgaggccaaggcgcgcgccgaggctctg
ggtgccaaggtgtccggttctgtgagcgctaaaaccgatcttgttgtggccggtccgggc
gcaggcagtaaagccaaaaaggccgaaagcctgggcattgaaatgatcgacgaagacggc
tggctcgatctgatcggagaggcatga
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integrated database retrieval system
