Ruditapes philippinarum (Manila clam): 132719017
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Entry
132719017 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132719017
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132719017
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132719017
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
Helicase_C
CARD_2
RIG-I_C
AAA_19
AAA_22
CARD
SLFN-g3_helicase
DUF87
Motif
Other DBs
NCBI-GeneID:
132719017
NCBI-ProteinID:
XP_060558734
LinkDB
All DBs
Position
Unknown
AA seq
1041 aa
AA seq
DB search
MASNIEARLRKYRQGFEKCMKDPSIVSLLAANAIISDEDASRIKHFYIEGQSIRASKELL
DAVFNSEALGKWQSFIDSLDHADYPFLKQLLSEQTTYDAFSSKHAQTIICVFTPNLEKSI
CAKEFVSELMARGVLNKTDVDIILKTYETKGDIYSTMILLDRMQCRQAPQKWYYEFLDVL
MKKDCQHIVKEIEPDFIKNPSAYMPKLGTIVSNSTEKVMVSQRKYFDDEQGACGSIHEHI
LEDTGEGYEDTNDLGAPTSLPEKHNSFLKSNECQIDSLDTNLKELNIKPDMSKSLPIAVE
TYQRQNSKPGKTEEYNAGPDNCEGEEDDDEDSMGSDYDNAEVEAKALASHTAAPFQLREY
QLELAENAVLGRNTIICAETGSGKTWVALHIVQQHLQNAMNGPRKVVFMARTGALIKQQS
DRFKNYLPQFQTRLITGEDDESRMLNIFLENYDILCFTPQILVNNLEDNVIKSLSEFSLL
ILDECHHTRGDGPYSTLMRKYLVEKSKTKKEMPQVVGLTASIGVGKSRTDQESVDYILRV
CACLDVRIISTVERNFKELKKHVSIPDEETIQLVKQKDDPCKHLILTAMEETEDMLQDNS
LMQPDMIDLMDKQPRDRESQEYNKWTVDVMRAALLKVDDYDVSRDISSCAKYLNIYNSAL
EVNKLLLSRDVIKYLAEKHRLEGENKDKLTEMEKELFRNLQNVQKTINVKGKNTENPNVR
ILSDTLSKMMIEKGDNSRAMVFVKARATCRSLAAFLDRDLQSSGAKASPLYGKENRGGDD
GMTESQQTEILDRFRSGFFKVLVCTSVGNEGIDVPDCNIVLSYEYSGDEITKIQMKGRAR
KKKATTITMGSNKVVEQEMINTYKAAMMYRAMIIVKQLDPKYINMKVNAFQSEETHKYRF
KAEVEKLKKGRKSDENYAILCGRCNTFACYVSDVRQLGHDHIVIDKDFADKITRKEHKKP
KTYDGLHKKYKMICKKCPIDWGIIGLRDGLDCMILKIINFKFRNLRTHGVSTYKKWIDVP
YDVPEIKLEDLPRLLGGPEEL
NT seq
3126 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctaatattgaagccaggttgcggaaatatcgtcagggatttgagaaatgtatg
aaagatccatctattgtttctctccttgctgcaaacgctatcatatctgacgaggatgct
tctaggataaagcatttttacatagaagggcagtcaatacgggcgtccaaagagttgtta
gacgcagttttcaattcagaggctcttggaaaatggcaatcatttatagattcccttgac
catgcagattatccgtttttgaagcaactgttgtcagaacaaaccacatatgatgcattt
tcatccaagcatgctcagacaatcatctgtgtgtttacaccaaatcttgaaaaatcgata
tgtgcaaaggagtttgtgtcagagttgatggcgagaggtgtactaaacaagacagatgta
gatattatccttaaaacatacgaaacaaagggcgatatatattcaacaatgattctccta
gataggatgcagtgtagacaggcacctcaaaaatggtattatgagtttctggatgtactg
atgaagaaggattgccagcatatagtgaaagaaatagaaccggactttattaaaaatcct
tcagcatatatgccaaagctgggtacaatcgtatcaaatagcacagagaaggttatggtt
agtcaaagaaaatattttgatgacgaacaaggtgcttgtggatcaatacatgaacatatt
cttgaagacacaggggaaggttacgaagatacaaatgacttgggagcaccaacatcactt
cctgaaaagcacaattctttcctgaaatcaaacgagtgccaaatcgacagcttagatacg
aatttaaaggagcttaatattaaacctgatatgtcaaaatctcttccgattgcagtagag
acataccaacggcaaaacagcaagcctgggaagactgaagaatataatgctggtcctgat
aattgtgaaggagaagaagatgatgatgaagattcaatgggttctgactatgataatgca
gaagttgaggcaaaggcattggcttcgcacacagcagctccatttcaattgcgcgaatat
caattagaacttgcagaaaatgcagttcttggaagaaatacaattatatgtgcagaaaca
ggatccggtaaaacatgggttgctttgcatatcgtacaacagcatttacaaaatgctatg
aacggtccaaggaaggtagtgttcatggcaaggactggggctttaatcaaacaacaatct
gacaggtttaaaaattatcttccacaatttcagacccgtttaataacaggagaagatgac
gaatcaaggatgttaaacatttttttagaaaattacgacatactatgtttcacacctcaa
attctagtgaataatctagaagacaacgtcataaaaagtttatcagaattttccttgttg
atacttgacgaatgccaccatacgagaggagatgggccttacagtacgctaatgagaaaa
tatctagtggaaaaatccaaaacaaaaaaagaaatgccacaggtagtaggtctgacagcc
tctattggcgtgggcaaatctcgaacagatcaggagtcggttgattacattcttagggta
tgtgcttgtctggacgtgagaataatttcaacagtagaaagaaattttaaagaattgaag
aaacatgtcagcattcctgatgaggaaacaatacagcttgttaagcagaaagatgatcct
tgtaaacatcttatattgactgcaatggaagaaacggaagatatgctacaagataattca
ttgatgcaacctgatatgattgatctcatggacaagcagccacgtgaccgagagtcgcaa
gaatacaataaatggacagttgatgtaatgagagctgcacttttgaaggtggatgactat
gatgtgtccagagatataagtagttgtgcaaaatacttgaatatttacaactccgcctta
gaggttaataaactcttgctatcgagagatgtcattaagtatttggctgaaaaacacaga
cttgaaggggaaaacaaagacaaacttactgagatggaaaaggaactattcagaaatctg
caaaatgtgcagaaaacaataaacgttaaagggaaaaacacagaaaatccaaatgtgagg
attttgagcgacaccttaagtaagatgatgatagaaaaaggagacaattcaagagcaatg
gtttttgtgaaggcaagggctacttgcagatctcttgctgcatttttggacagggatctc
cagagtagtggagctaaagcgagtccattatatggaaaggaaaatcgtggtggagatgac
ggaatgacagaaagtcaacaaacagagatattagacaggtttcgcagtggattcttcaaa
gtactagtatgtacatctgttgggaatgagggtatagatgttcctgattgtaatattgtt
cttagttacgagtattccggagatgaaataacaaaaatacaaatgaaaggtcgtgctcgt
aagaaaaaagcgacaacaatcactatgggaagtaataaagtagtagagcaagaaatgatc
aatacatacaaagctgcaatgatgtatagggcaatgataattgtcaaacagttggatcca
aaatacatcaatatgaaagtcaatgccttccaaagtgaagaaacacataaatacagattt
aaagcagaagttgagaagttgaaaaagggaaggaagtctgatgaaaattacgcgattttg
tgtggaagatgcaacacttttgcttgttatgtctcagatgtaaggcagctcggacatgat
catatcgtaattgataaagatttcgctgacaagattacaagaaaagaacacaagaagccg
aaaacatatgacggcctacacaaaaaatacaagatgatttgcaagaaatgcccaatagac
tggggtataattggactaagagatggcttagactgcatgatcctaaaaatcatcaatttc
aagtttaggaatttgagaacacatggcgtgagtacctacaagaaatggatcgatgtaccg
tacgatgttcctgaaataaagttggaagatctaccaagattgctaggaggtccagaggaa
ttataa
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