Ruditapes philippinarum (Manila clam): 132722147
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Entry
132722147 CDS
T09557
Name
(RefSeq) TNF receptor-associated factor 3-like
KO
K03174
TNF receptor-associated factor 3
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04620
Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
132722147
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
zf-TRAF
Sina_ZnF
zf-C3HC4_2
TRAF3_RING
zf-RING_UBOX
FPP
DNA_repr_REX1B
zf-C3HC4_4
Fez1
DUF5830
DUF3829_2nd
CCDC22_CC
LRS4
Seryl_tRNA_N
DegS
Motif
Other DBs
NCBI-GeneID:
132722147
NCBI-ProteinID:
XP_060562563
LinkDB
All DBs
Position
Unknown
AA seq
554 aa
AA seq
DB search
MCSDYSSIQSTPSGTPHFIRLEPRHCCHVCKNVLRDSMQTACGHRICKLCVGPLFDDKTE
PIPCPAGEEDCSDLFKSDITQDPSSRREIRDLLVSCDFVSFGCIDEIKWKALSNHVQTCK
YQPVTCPNSGCNKRIPPKEKNIHLKKYCEYKPEQCTFCKKFVPSKLMQSHIEDECTSVVM
PCPYQCGSPKMTRVELNNHKEICHMKPRECQYKCVGCTFMGTEEEVKNHLTSDLNGHIKL
TTDYAKRVGDQTVQCSRELQVVQSERDQLRAQVNNMNQEMTLMKNNFEKTMNLCKELKLK
MVSVTERVIHLEKQLENTAKKDIVERHDRDVRTMQTSLTQIRAQVVQLERLYLNEGRSGS
GEISSAPELKRRIDKHDSQFAQLDVQMAELDLRFQILETASYDGTLMWKLRDYARRKQDA
VQGRTLSLYSQPFYTHRYGYKMCARVYLNGDGMGKGSHMSLFFVVMRGEYDNLLPWPFQQ
KVTMTLLDQETGQCNLSDSFRPDPTSSRKPTTDMNIASGCPLFVSHTVLETAKYVRDDTI
VIMFQVDMLNVYHP
NT seq
1665 nt
NT seq
+upstream
nt +downstream
nt
atgtgtagtgattactcatctattcagtcaactccttcgggaactccacattttattaga
ctagaacccaggcactgttgccatgtttgtaaaaatgttctccgggactcaatgcagaca
gcatgtggtcacagaatatgtaaactttgtgttggaccgttgtttgatgataaaacagaa
ccaataccgtgtccagctggtgaagaagattgttcagatttattcaaaagtgatataact
caagatccaagtagtcgccgagaaattagagacctcctcgtgtcatgtgactttgtgagc
tttggatgcatagatgaaataaaatggaaggcgttatctaatcatgttcagacttgcaag
tatcaaccagtcacatgtccaaatagtggctgcaataaaagaatacccccgaaagaaaag
aacattcatttaaagaagtattgtgagtataagcccgaacaatgcacgttttgtaaaaag
tttgttccttcaaagcttatgcagagccacatagaagatgaatgcacatctgttgtcatg
ccgtgtccctatcaatgcggtagcccaaaaatgacgagagttgagctgaataatcacaag
gaaatatgccacatgaagcctagagaatgtcagtataaatgtgttggctgtacgttcatg
ggtacagaggaagaggtaaaaaatcatttaaccagtgacttaaacggacatataaaatta
acaactgattatgctaaaagagtgggggatcaaaccgtgcaatgttcaagggaacttcag
gtagtacaatcagaaagagatcagcttcgtgcacaggttaataatatgaatcaagaaatg
acgctgatgaaaaacaattttgagaagactatgaatttatgtaaggaattaaagttaaaa
atggtatcagtaacagagcgtgtaattcatctggagaagcaactagaaaatactgctaag
aaagacattgttgaacgtcatgatagagatgtacgaaccatgcagacatctctgacacag
attagggcacaagttgttcaacttgaaagattatatttaaatgaaggaagatcaggctca
ggtgaaatctcatcagctccagagttaaagcgtagaatagacaagcatgacagccaattt
gcacagttagatgttcagatggcagaacttgacctgagatttcagatcctggagacagca
agctatgatggtacgctaatgtggaagttgagggactatgctcggagaaaacaagacgca
gttcaagggagaacactctcattgtacagtcagccattttacacccacagatatggttat
aagatgtgtgcaagggtatatcttaacggagatggtatgggaaaaggaagtcacatgagc
ctgttctttgttgttatgagaggtgagtatgataacctgttgccatggccgttccagcag
aaggtaacgatgacacttcttgaccaggagacaggacagtgcaacctttctgactcgttc
agaccagatccaacaagtagcagaaaaccaacaacagacatgaatattgcttcaggatgt
ccactatttgtatctcatactgtgttggaaacagcaaagtatgttagagatgacacaatc
gtgatcatgtttcaagttgatatgttaaatgtgtaccacccataa
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integrated database retrieval system
