Ruditapes philippinarum (Manila clam): 132722233
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Entry
132722233 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132722233
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132722233
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132722233
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
CARD_2
DEAD
ResIII
Helicase_C
RIG-I_C
CARD
Motif
Other DBs
NCBI-GeneID:
132722233
NCBI-ProteinID:
XP_060562666
LinkDB
All DBs
Position
Unknown
AA seq
1129 aa
AA seq
DB search
MAEADMDDFPRDDVIKFNIQVFLPYICDCVKATDLLVHLQYFTREQRKDIFKTCAQNSVQ
GMRKAMEVLMNEVEDDGRFIAIRNAIEDSRYPKIVKMIDGNIVADDNNYRKIIDLFAEEI
IDRLSPAELLPNLVSQGTLTRNDADEIRAEERNHGSRRACWVLLFHLPNRVEDWFRNFME
ALLDCKYDDIAEILDPDMFQKLMVQREDARQAFKTELESDIREDILEDDNFDNTIEKDDF
AEPEKDEKCSDHNVYKTDKKISEKSGIESLVKEINVLSIESNCKQVVDEAVTEDVLRSEG
VEDVGDSLTEVKQEAMILYKRQNTDRCKEEQELSDHSKGSHKTRGEDKMSSNAVFNNVFE
DLDGMDTIDANDQSIDFDELLAGGADTGINNGLNDLQNDLGNDGNDYEQNGEVDFNIVTD
EDEVGADDKDVELREYQKELAKEGCEGENVIVMAPTNTGKTRVAWRIMQVHLRRQRNAGK
IGKVIFLVENEALAFQQGKDCAKRLPAYRTKVISGSVQRDQKQYLRDFIDRRDIMVVTAQ
VLLNALKQKEIDSITRFSMIVFDECHHTDNYHRFNEIMSLYMHLKLRGNLKGELPQIVGL
TASLGVGGNTRHDAAMGHMKSLLANLDAKFLCTVRRNKEELKRFENNPIEKTVAARKRVN
DRYRKAVLAIMDIINEYMISHPSLHNIPRKDAFIKEACVVPPTRGSEKFQQWLSEFKKAL
GKLSSDEVRRMMNPCRLHLEHYNKALLIHADARIKDAEVILEDFMEIEREINPKNDTDVM
LLELYDNLKQQSFTDEPENPKLVEMQTIVMQIFDKNEDARGIIFVKTRELAQALVNWMKQ
TAPLDTLNASEFVGQAASKAEGGMTKVGQKDVLEYFDGGRHKIIIATSVAEEGLDITKCN
LVIRYEHVTNEIVRLQSRGRARRQDSRYYVLTEEGSWIVAKEEKNALLEKIMNAIVPELQ
VYIEDHPNLWEKEMREMQEEKKLQEELKEEERRLNMSNDEHEFRCLNCNHFICFLSDIRK
IQEAHHVVVDEAASTRLISYRNPHPRFIDDELKFDGAIFCGNIDCQRELGGVCEYRHAEF
PLLKIKNFRVVNKNGQGNTYKQWKKANFNIEAFTLDDLRRVVERRRDAM
NT seq
3390 nt
NT seq
+upstream
nt +downstream
nt
atggcagaagcagacatggatgatttcccgcgagatgatgtaattaaatttaacattcag
gttttcctaccatacatttgtgactgtgtgaaagccactgacttgttggtacatcttcaa
tatttcacaagagaacaaaggaaggacatatttaaaacatgtgctcaaaacagtgtgcag
ggtatgcgtaaggccatggaagttttaatgaacgaggtggaagatgatggaagatttatt
gcaatcaggaatgccatagaggatagtcgttacccaaaaattgttaaaatgattgatggc
aacatagttgctgatgataataattaccggaaaattatcgacctatttgctgaagaaatc
attgatcgattaagtcctgcagaattgcttccgaatctagtaagtcaaggtaccctcaca
aggaatgacgcagatgaaataagggccgaggaacgaaatcacggcagtagaagagcctgt
tgggttttgctgttccatttgccaaatcgagtagaggattggtttagaaatttcatggaa
gctcttctagattgtaaatacgatgacattgcagaaattctggatccagatatgtttcag
aaactaatggttcaacgagaagatgcaagacaagctttcaagactgagttagaaagtgat
atccgagaagatatacttgaagatgacaactttgacaatacaattgaaaaggatgatttt
gcagaaccagaaaaggatgaaaagtgttcagatcacaacgtctataaaactgataaaaag
atatcagaaaaatctggcatagaatcacttgtgaaagaaataaacgttctgtcgattgaa
agtaactgtaagcaggttgtagatgaagcggtaacggaggatgtgttgcgaagcgaaggg
gtagaagatgtgggtgacagtttaacagaggtgaaacaggaagcaatgattctatataaa
cgacaaaacacggatagatgtaaagaagaacaggaactgtcagatcattcaaaaggatct
cataaaacacgaggtgaagacaaaatgtcatcaaacgctgtgttcaataacgtttttgaa
gatctagacggtatggacactattgatgccaacgatcaatctatagactttgatgaatta
cttgctggcggagctgacacaggaataaacaatggccttaatgatttacaaaacgaccta
ggcaatgatggaaatgattacgaacaaaatggagaagttgattttaacatagttacagat
gaagacgaagttggcgcagatgacaaagatgtagaattaagagaatatcaaaaggaactt
gcaaaagaaggttgtgaaggggaaaatgttattgttatggcaccaacaaacactggaaaa
actagggtggcatggcgcattatgcaagtgcacttacgacgtcaaagaaacgctggaaag
attgggaaggtgatatttttggtagaaaatgaagcgttagccttccagcagggcaaagat
tgtgccaaacgactacctgcatacagaacaaaagtgataagtgggagcgttcaaagggac
cagaaacagtatctacgagattttatcgataggagagatataatggtggtgacggcccaa
gtcttactgaacgctctgaagcagaaggaaattgacagtataacgagattttctatgatc
gtgtttgacgaatgtcatcacaccgacaactatcacagatttaatgagatcatgagcctt
tacatgcatcttaaattaaggggcaatttaaaaggagaactcccgcagatcgtcggactc
actgcatctcttggagttggcggaaatacaagacatgatgctgcaatgggccacatgaaa
agcttactagcaaatcttgatgccaaattcttgtgtactgttcgaaggaacaaagaagag
ctaaaacgatttgaaaacaatcctattgaaaagacagttgctgcaaggaagcgggtaaac
gataggtatcggaaagcggtattggctataatggatattattaatgaatacatgatatca
catccaagtttacacaacattcctagaaaagatgcgtttattaaagaggcatgtgtcgtg
ccaccaactcgaggatcagagaaatttcagcagtggctcagcgaatttaagaaagcgtta
gggaagcttagttcagacgaagttaggagaatgatgaatccttgccgattacatttagag
cattacaacaaagcgttacttattcacgctgacgcaagaattaaagatgctgaagtgatt
cttgaggatttcatggaaatagaaagagaaattaatcccaaaaatgacacagatgtgatg
cttcttgaattatatgataatctaaaacaacaaagttttactgatgagccagaaaatcca
aagctagtagaaatgcaaacaattgttatgcaaatatttgacaaaaatgaggatgctcga
ggcattatatttgtgaagacaagagaattagcgcaagctttggttaattggatgaagcaa
acagctcctctagatacacttaatgcttcagaatttgtaggccaagctgcgtccaaagcg
gaaggaggcatgacgaaagttggtcagaaagacgttttggaatatttcgatggtgggcgt
cacaaaataataattgcaacttctgtagccgaagaaggattggacatcacaaaatgcaac
cttgtcattcgatatgagcacgtcacaaacgaaattgtgcgacttcagtcaagaggacga
gcaagacggcaggacagtcgctattacgttttgacagaagaaggttcttggatcgtggca
aaggaagaaaaaaatgcacttctggaaaagatcatgaatgctattgtaccagaattgcag
gtttatatagaagatcatccaaacctttgggaaaaagaaatgcgagagatgcaggaagag
aagaagctccaggaagaacttaaagaagaagaacgccgacttaacatgtcaaatgacgag
catgaatttagatgtttaaattgcaaccatttcatttgcttcttatctgacatacgtaaa
attcaagaagctcatcacgtggtagttgatgaagcagcatcaaccaggctgatttcttac
cgaaatccgcatccaagatttatagatgatgagttaaaatttgatggtgctatattctgt
ggaaacatagattgtcaacgtgaacttggcggtgtgtgcgagtatagacatgcagaattt
cctttactcaaaataaagaatttcagggttgtcaataagaacggacaaggaaatacatac
aaacaatggaaaaaggctaatttcaatattgaagcgtttacgctagatgatcttcggcgt
gttgttgagcgtcgcagagatgccatgtga
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