Ruditapes philippinarum (Manila clam): 132724617
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Entry
132724617 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132724617
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132724617
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132724617
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
RIG-I_C-RD
CARD_2
Helicase_C
ResIII
RIG-I_C
AAA_22
AAA_19
CCDC-167
DUF6809
Malic_M
Motif
Other DBs
NCBI-GeneID:
132724617
NCBI-ProteinID:
XP_060565535
LinkDB
All DBs
Position
Unknown
AA seq
1071 aa
AA seq
DB search
MAVEARVLLFSQVISRCIKDPSVVTRLDADLVIPSDECSKIKKMYTDGDPFKANEEMITC
LQKSSARGKWKSFLNALDNLEYKYLKSLLETDGKPNVNDDRGGAMIRMFTPYLESTIDAM
EIVVELFSRKVINDTDFGIIRAKNQTMGNTYATIVLLERMQCRQAPAEWYYQFLDVLVHK
NLKHIVEEIEPDFLRCPEQFRFCNERQRECEGNVPINESYDTEVPGCSTAGDVFEHMLTD
CGEAAEEMDESVPEPLDDEENDPDSSSDLKTKETNDFSISKDGLCKYTNTQNSIINETES
GGTCALNKLAFQALGTRPAPEGQALSCPDSTGQNETEQTSEEEKQNDSVELEKTASVVSD
EFVDTNDETGVKTESDLEHVNKDGQPLAEKLYPFQNELAEKALAGKNTIICAPTGSGKTW
VATHIIDRHLKSAVKGQSKRKVVFMARNGVLVKQQMDFISKELTYANVKHIEGNTEESTM
MNAFLEDYDIFLFTPQILVNNLNSDIKDLSVFSLMILDECHHARGEEPYNTLMKHYLEQK
TNGVAGLPQIIGLTASIGTGRAKSEQDALDHIYRLCASLDVRCLSTVEKHKEDLAKHFSV
PSEEKIVMKMRPTDPCRSILLEAVKKTADVLDDLALMEPKLITLMHKCPKDVEAKAYELW
VASVINVAESLSGGEGRDIATCAKYLQVYYNALEINRLLNKKDIAEYLAKQLANENENRE
SLTSEEKRLFDGLKDVQRELKNVECENPNVHVISKIISNLFIGKEADANSRVMVFVHARA
TCRALADFLNDELEKIHVKASPLLGKETRGTDKGMTEEDQTKVLNEFKEGEYKVLVATSI
GMEGLDVPDCNMTLNYNFNGNEITKIQMSGRSRKANGKEIMIGTDAQFAKDTIVMYRIKL
MTEAIESFKTTDTNSINRKILEVQKKTLDDFKWQQKIKNLKRNKQSDESDYEIQCRRCGT
FICNTSNLRQLDTSYLVALKDFDIKINKKAHTKRGNMGALQKKYKMNCKNCPMDWGVIGV
KDGIEYFVLKLESLKFISSEKMTTNYKKWDDMPYKIKTLTVPDLDDMYNDS
NT seq
3216 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggaagctagagtgttactcttcagtcaggtgatttcaagatgcatcaaggat
ccatccgtcgtaactcgtctcgatgcagatttagtaataccttctgatgagtgttcaaag
ataaagaagatgtatacagatggcgatccatttaaagccaatgaagagatgataacctgt
cttcaaaaatcgtctgcaagagggaaatggaaatcgtttttaaatgctttagataattta
gagtacaagtatctcaagtccttactggaaacagacggtaaaccaaatgtgaatgatgac
cgtggaggggcaatgataagaatgtttacaccttacctagaaagtacaattgatgcaatg
gaaatcgttgttgagcttttttcaagaaaggtgattaatgacacggatttcggaattatt
cgtgcaaaaaatcaaacaatggggaacacatatgcaacaatcgtacttttagagaggatg
cagtgcagacaggctccagccgaatggtattatcaatttcttgatgtattggttcataaa
aacctaaaacacattgttgaagaaattgaaccggacttcctacgatgtcccgagcaattc
cgattttgtaatgaaagacaaagggaatgcgaaggaaatgtcccaattaatgagtcatac
gatacagaagtgccaggatgcagcaccgctggcgacgtatttgaacacatgctgacagat
tgcggagaagctgctgaagaaatggacgaaagtgtccctgaaccactggacgatgaggaa
aatgatcctgactcgtctagtgatttgaaaacaaaagagacaaacgattttagtatttcc
aaagatgggctgtgcaaatacacaaacacacaaaacagtataataaatgagacagaatct
ggaggcacatgcgctttaaacaaattagcatttcaggcacttgggacaagaccagcccca
gaaggacaagcgttatcttgccctgactctactggccaaaacgaaacggaacaaacaagt
gaagaggaaaaacaaaatgattccgttgaacttgaaaagacagcatctgtagtcagtgat
gaatttgtagacacaaatgatgaaactggtgtgaaaacagaatcagacttagaacacgtt
aacaaagatggacagccgttagctgagaaattataccctttccaaaatgagctggcagaa
aaggcattagctggaaagaacactataatatgcgccccgacagggagtggcaagacatgg
gtagccacgcatatcatcgacagacacttaaaatcggctgtaaaaggacaaagtaaaaga
aaagtagttttcatggcaagaaatggagtgcttgttaagcaacaaatggactttatatca
aaagaattgacatatgcaaatgtcaaacacattgaaggcaatacggaagaatcaacgatg
atgaacgcctttctcgaagactacgacatttttctatttacaccacaaattctcgtgaat
aatctaaacagtgatataaaagatttgtcggtattttcactgatgatacttgatgaatgt
caccacgctagaggcgaagaaccatataacaccctgatgaagcattacctggagcaaaaa
actaatggagttgcaggattaccacagatcattgggctgacagcatctattggtactggc
agagctaagtcagaacaagatgcacttgatcatatttatcgattgtgtgcaagtttagat
gtaagatgtttatctacagtagaaaagcacaaagaagatcttgctaaacacttcagcgtt
ccaagtgaagaaaaaattgtcatgaaaatgcgaccgacagatccttgcagaagtatactc
cttgaagcagtcaagaaaacagcggatgttctcgatgatttagctttgatggaaccaaaa
ttgatcacattaatgcacaagtgccctaaagatgtagaagcaaaagcatacgagttatgg
gttgcttctgtaataaatgttgccgaatcactctctggtggagaagggagggatattgca
acttgtgcaaaatatcttcaggtttactacaatgcccttgaaataaacagattgttaaac
aaaaaggacattgccgaatatctggcaaaacaacttgcaaacgaaaatgagaaccgagaa
agtctcacaagtgaagaaaagaggctattcgatggccttaaagatgtgcagagagaattg
aaaaatgttgaatgtgaaaatccaaacgttcacgtaataagtaaaattatatccaatctg
tttattggtaaagaggctgacgcgaactcaagagttatggtatttgttcacgcacgtgca
acatgcagagctttggcagattttcttaatgatgagttggaaaaaatacatgttaaagct
agtccgttgcttggcaaagaaaccagaggaaccgataaaggtatgaccgaggaggaccaa
acaaaagtattgaatgaatttaaagaaggggaatataaggtgctggttgccacatcaatc
ggaatggagggactggatgtaccagactgtaatatgacactaaattacaacttcaacggc
aacgaaattactaaaatacaaatgtcagggcgcagcaggaaagccaatggcaaagaaatt
atgattggaacagatgctcagtttgctaaggacacgattgttatgtacaggatcaaactt
atgactgaagcaatagaaagtttcaagacaaccgacaccaactctattaacagaaagatt
cttgaagtgcagaagaaaacgttagatgatttcaaatggcaacagaaaattaaaaatctg
aaacgaaacaagcagtctgatgaaagcgactatgaaatacaatgccgaaggtgcggcacg
tttatttgtaatacttcaaatcttcgacagctagacacatcatatcttgtcgccttaaaa
gattttgatataaaaatcaataaaaaggcacacacgaaaaggggtaacatgggagcttta
caaaagaaatacaagatgaattgcaaaaactgcccgatggactggggagttattggcgtt
aaagatggcattgagtactttgttttgaaattagaaagcctaaagtttatcagttctgag
aagatgacaacaaactacaagaaatgggacgatatgccatataaaattaaaacgctcacg
gttcctgacctcgacgacatgtataatgacagttaa
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