Ruditapes philippinarum (Manila clam): 132724618
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Entry
132724618 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132724618
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132724618
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132724618
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
RIG-I_C
Helicase_C
AAA_19
IstB_IS21
PhoH
Yippee-Mis18
AAA_22
nSTAND3
AAA_16
NACHT
Motif
Other DBs
NCBI-GeneID:
132724618
NCBI-ProteinID:
XP_060565536
LinkDB
All DBs
Position
Unknown
AA seq
895 aa
AA seq
DB search
MSSLTSVESAKRSLSENFAQSFDENQDMSLNFNSLLQDNENISKGQVKSANDMNEGRSYN
SSEFGSGLEADTSLDSYLENMTLHDSNIANRQKSMMSFNSFDSANVQVIEPKQKEQASFS
QFQKLTTSKSVKAGESTTEVNVDTPQPNSISKDNLYDRTKFDSKSDDFRELKDENERSQL
NITETASYEKDEDDIEDVDIKLRQYQQELAAPALAGKNVIIVAPTGSGKTRVAMRIIQDH
IRQQKGRAIAKVVFLVNQVALANQQGNACGELLKKYTSKVITGESQRKSECLKDFIDKRD
ILIVTAQVLLDALLRKEISGIDKFSLIVFDECHHTHANHTFNQIMGRYMDLKFDKPDISL
PQIVGLTASVGVGKAKNEEKAVEHIKQLMANLDAHVICTVQKNVGELRQHVSLPEEETFR
VPKRRNDTFHDNIVKLMNTIEKRMNQSSLVKEIPEATKIESALKAPSQKGAAQYTQWVSK
LWRETAKLKLPDARRFLNSCRAHLEHYNNALIIYNDARMEDALSYLDAEMNKWKENAIMD
ENELVLHGAFKKLRGARCRNCPNPKLDKLCEMITKAYKDNFENSRGIVFVKTRDLSKAIL
SWMKETPGLRELNPIVFVGTNMAADKGGMTKAEQVDALEYFRNGHHKLIIATSVAEEGLD
ISKCNLVIRYDHVTNEIAMVQSRGRGRAEDSKYFVIAEENTGMAEKEELNMIREVMMRKA
IIQLQDYIQHSPDKFRKEIQKFQDEANLDRQLKSLGSRRKLVRSGQFELRCVKCDHFICW
SDDIKKVQDSHHVVIDKYLSQRVTFVKCGSTRYQDDAIQFVGKLICKDCGGNLGVICIHR
TLEFPVLKIEHFLIVDTNGRQDTCKKWKSAPFIVPPLTNDDWKEIVKSRKETGEL
NT seq
2688 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcgttgacgagtgtggagtcggctaaacgatctctgagtgaaaacttcgcccaa
tctttcgatgaaaatcaagacatgagcttaaatttcaactctttattacaagataatgag
aatatatccaaaggacaagtcaagtctgctaatgacatgaatgagggaaggtcgtacaat
tcatcagagtttggttcagggctagaggccgacacaagtttagatagctacctagaaaac
atgacactacatgattctaatattgccaatcgacagaagagtatgatgtcatttaattcc
tttgactcggcaaatgtgcaggtcatagagccgaagcaaaaggagcaggcgagtttttcc
cagtttcaaaagttgacgacatcaaagtctgttaaagctggtgaaagtacgacagaagtg
aatgttgacacaccacagccaaacagtatcagtaaagacaacctgtatgatcgtactaag
ttcgactcaaagagtgacgactttcgtgagctgaaggatgaaaatgaacgcagccagttg
aatattactgaaacagcttcttatgagaaggacgaggatgatattgaagatgtggatata
aaacttagacaataccagcaagagttagctgcccctgctttagccgggaaaaatgtgatc
attgtagctccgacaggatcgggtaaaactcgggtagccatgagaataattcaggaccat
atacgacagcagaagggtcgagcgatcgccaaggtggtatttcttgttaaccaagtggca
ttggccaatcaacaaggaaatgcttgcggcgaactgctgaaaaaatacacatccaaagtt
ataactggagagtctcaacggaaaagcgagtgtttaaaagattttatagacaaacgtgac
atactgattgttaccgctcaagtattactggacgcgttattgaggaaagagattagtggt
atagacaagttctcgctcatcgtgtttgatgaatgccatcatacccacgccaaccacacg
ttcaatcagatcatgggtcgatacatggacctgaagttcgataaacctgatatttcttta
ccacagattgtgggattgacagcttctgttggtgtaggtaaggccaagaatgaagaaaaa
gctgtagaacacatcaaacagctgatggccaatctagatgctcatgttatatgtactgta
caaaagaatgtgggcgaacttagacagcacgtcagtttaccagaggaagagacgttccgt
gttccgaagagacggaatgatacgttccatgataatatcgttaaactgatgaacactata
gagaaacgaatgaaccagtcatctttggtgaaggagataccagaagccactaagattgaa
agtgctttgaaagccccttcccagaaaggcgcagctcagtatactcagtgggtcagcaag
ctgtggcgggaaactgcaaaactaaaattacccgatgctagaagatttctgaattcttgt
cgagctcatttagagcattacaacaatgcactgattatttataatgacgctagaatggag
gacgccctctcgtacctcgatgccgagatgaataaatggaaagaaaatgctatcatggat
gaaaatgaactcgttctgcatggagctttcaaaaaacttcgaggtgcaagatgtcgtaac
tgtccaaatccgaagctggataagttatgtgagatgataacgaaggcatacaaagacaac
tttgagaactcacgaggaattgtgtttgtgaagacgagagatctatcgaaggcgattcta
agttggatgaaggaaacaccaggattgagggaactgaatcctatagtatttgtcggaaca
aacatggctgctgataagggaggtatgacaaaggcagagcaagtcgatgccctcgagtac
ttccgcaatggccatcataagttgataatagcaacctctgttgccgaggaaggtcttgat
atctccaagtgtaatctcgtcatcagatacgatcatgtgaccaatgagatagctatggtc
caatctagaggtagaggcagagcagaagacagcaagtattttgtgatagcggaggagaat
acaggtatggcagagaaagaagaacttaacatgataagagaagtgatgatgagaaaagct
atcattcagctacaggactacattcagcatagtccagataaatttcgaaaagagatccag
aaattccaagacgaggcaaacttagatcggcaattaaagtcgctaggatcgagaaggaaa
ctggtaagatcgggacagttcgagctgcgttgtgtaaaatgtgatcattttatatgctgg
tccgatgatattaaaaaggttcaagattcccaccatgttgtcattgacaagtacctgtca
caaagggttacatttgttaagtgtgggtcgactagatatcaagacgatgccatccagttt
gtagggaaattgatttgtaaggattgtggtggtaaccttggagttatatgtatacacagg
acattggaatttccggttctaaaaatagaacatttcctgattgttgatacaaatggcagg
caggacacgtgtaagaaatggaaatcggccccgttcattgttccgccacttacaaatgat
gattggaaggagatagttaaatccaggaaagaaactggagaactgtag
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