Ruditapes philippinarum (Manila clam): 132724623
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Entry
132724623 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132724623
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132724623
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132724623
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
DEAD
Helicase_C
ResIII
RIG-I_C-RD
RIG-I_C
AAA_22
CARD
AAA_19
AAA_25
Malic_M
Yippee-Mis18
Motif
Other DBs
NCBI-GeneID:
132724623
NCBI-ProteinID:
XP_060565540
LinkDB
All DBs
Position
Unknown
AA seq
1111 aa
AA seq
DB search
MRKQNDNFQIDIPWKVGKGRRPDKMEVEERLLFYSQEITRCIKEPSVISHLEADSIIPSD
DCSKIKKIFIDADPFKANEMMIDCLMKSSAQGKWKSLLTALEKSEYVYIKSLLETEGKPS
MKDEREKAIIRVFISYLEKNIDAMDIVAELFSRKVINDTDAELIRAQYHNKGNTYATIVL
LDRMQCRLAPGEWFYQFLDVLVQKNLKHIVKEIEPDFLQYPERFGSSHESVEKCIDCDKK
DMAVEACEMKLPVSIKSGDIQEHVLTEYSSVATDMASHCMVSEIDMNDCKSSSSSSDYED
ALEEIDEHVYTPHALEGDDIESHTNEAKDTCISLDRFALNSCSENTDRIETSQDDITELN
ATIQLGERAPPEGRNFEPDVTAEITTQNDTDVQNDEIPLTEELTSETEESDDFSDADETT
ESKSFEEKLYPFQHELAGKALAGENTIIVAPTGSGKTWVATHIIDRHLNMPTEGGKKRRV
VFMARNGILVEQQKNFISKRLPYANVQHLKGDTDEAMMLNAFLEDYDIFLFTPQILVNNL
NKDVKSLSVFSLMVFDECHHTIRNQPYNTLMKKYLLEKSNGIKNLPQIIGLTASIGTGRA
KSEQDALEHIFNVCASLDVRDLSTVEKHKDDLAKHVSIPKEDKIPMQARQTDQCKSILLV
ALKKTLDFLEDLAWTEPNLIEIMHKCPKNIEEKEFGKWISDISKAAESLRRGRGRNVVSC
GKYLQIYNNALEINRLLRTTDVALYLARQHEEEAEHPETFTKEESCLFETLKEVQKDLRK
VKSDNPNVHVVSSILSNLFAGKEADANSRAMVFVQTRATCRALAAFLNEELKSIYVKVSP
LIGKDTRGIDKGMTEEDQTRIIDEFKEGDFKVLVATSVGMEGLDVPDCNMTLNYNFNANE
ITKIQMSGRSRKAKGTAVMIATDTQFDKDRVVMYRVKLMAWAVAFFNNLDAKSIERRILT
AQKKIIDDYKWHLQTMELSYNRKSDVNDYEIHCKKCGKHICNTSNLRKLDTSYIVAMQGF
EQKIRRVEHERSVSMGLLKKICRMFCTHCSKAWGVIAIKGDLEFYILKLENLKFICENSN
EYQTYKNWSSMPYKVTEIRNCDLERLYKQNE
NT seq
3336 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagcaaaatgacaattttcagatagatattccttggaaggttgggaaaggaagg
agaccagataaaatggaagttgaggaaagattgttgttctacagtcaggagattacaaga
tgcatcaaggagccatctgtcatttctcatctcgaggcagattcaattataccttctgac
gactgttcaaagataaagaagatatttatagatgccgatccttttaaagccaatgaaatg
atgatcgactgtcttatgaaatcatctgcacaagggaaatggaaatcattattgaccgct
ttggaaaaatcagaatatgtctacatcaagtccttactggaaacggaaggcaaaccaagt
atgaaagatgaacgcgaaaaggcaattatcagagtattcatatcttacctagagaagaat
attgatgcaatggatatcgttgctgagcttttttcaagaaaagttataaacgacacggat
gccgagttaattcgtgctcaatatcacaataaagggaacacatatgcaacaatcgtgctt
ttagacagaatgcaatgcagactggctccaggcgaatggttttatcaatttctcgatgta
ttggttcaaaaaaacctcaaacacattgtcaaagaaatcgagccagactttttgcaatac
cccgagcgattcggatcttctcatgaatcagtagagaaatgtattgactgtgacaaaaaa
gacatggctgttgaggcatgtgaaatgaaattacctgtatccataaagtccggtgacatt
caagaacacgttcttacggagtattctagcgtagctactgacatggccagccattgcatg
gtttcagaaatagacatgaatgactgtaaatcttcttcaagttcttctgactatgaagat
gctctagaagaaattgacgaacacgtttatacacctcatgctcttgaaggagatgatatt
gagtcacatacgaatgaagcaaaagacacatgcatatctctagacagatttgccttgaac
tcttgcagtgaaaatacagatagaatcgaaacctctcaagatgatataacagagctgaat
gcgactatacaacttggagaaagagcacctccagagggacggaactttgagcctgatgta
acagctgagattacaacacagaatgatacagatgttcaaaacgatgaaattcctttaaca
gaagaactgacaagcgagacagaagaatctgacgatttcagtgacgcagatgaaacaacg
gagtcaaaatcttttgaagagaaattgtatcctttccaacatgaactcgcagggaaggca
ttagcgggcgaaaacactatcatagttgctccgactggaagtggaaaaacatgggtggca
acacacattattgatagacatttaaatatgccaacagaaggaggaaagaaaagaagagtt
gtcttcatggctcgcaatggaatacttgtagagcaacaaaagaacttcatctccaaacga
ttgccttatgcgaatgtccaacatttaaaaggggacacagatgaggcgatgatgctaaat
gcatttcttgaagattatgacatattcctattcacaccgcaaattcttgtcaataatctg
aacaaagatgtaaaaagtttgtcggtattttcattaatggtatttgacgaatgccaccat
acaatccgcaatcaaccatataacacacttatgaagaaatatcttttggagaaatcgaat
ggaataaaaaacttaccacagatcattggactgacagcatctattggtactggaagagcc
aaatcagaacaagatgcgcttgaacacatatttaatgtatgtgcaagtttggatgtaaga
gatctgtcgacagtagaaaagcacaaagatgacctagcaaagcatgtcagcattccaaaa
gaagacaaaataccaatgcaagcgagacaaacagatcaatgtaaaagcatacttttagtg
gcattgaagaaaacactcgattttcttgaagatttagcatggacggaaccgaatttgata
gaaataatgcacaaatgtccaaagaatattgaagaaaaggaatttggaaagtggatatcg
gacataagtaaggcagcagaatcactaagaagaggtcggggaagaaatgtagtctcctgt
ggaaaatatcttcaaatctacaacaatgctttagagataaataggttactgagaactaca
gacgttgcactttaccttgcacgtcaacacgaggaagaagctgaacacccagaaaccttt
acaaaagaagaatcatgtctgtttgaaaccctgaaagaggtacaaaaagacttaagaaaa
gtgaagtctgacaatcccaacgtgcacgtcgtaagtagtattttatcaaatctttttgct
ggaaaggaagcagatgctaactctagagccatggtttttgtgcaaacacgagcaacatgc
agagctttggcagctttcctcaacgaagagttaaagtcaatatacgtaaaagtgagtcct
ctaataggaaaagacaccagaggaattgataaaggcatgactgaggaagaccaaacaaga
ataatagatgaatttaaggaaggtgatttcaaagtgctagtggcgacatcagttggaatg
gagggccttgatgtacctgactgtaatatgacactaaattacaactttaacgcaaacgaa
attaccaagatacaaatgtcaggacgcagcaggaaagcaaagggcacagcagttatgatt
gctactgacactcagttcgataaagacagagtagtaatgtacagagttaaattaatggcg
tgggcagttgcattttttaataatttggatgccaagtccattgaaagacgaatacttact
gcgcagaagaaaatcattgatgactataaatggcacctacaaacaatggagctgtcttac
aacaggaagtccgatgtaaatgattacgaaattcactgtaagaaatgtggcaaacatatt
tgtaatacttctaatctccggaaattagatacatcttatattgttgccatgcaaggattt
gaacagaaaatccgaagagtagaacatgaaagaagtgttagtatgggtttactgaagaaa
atatgtaggatgttctgcacgcattgctctaaagcctggggagttattgcaattaaaggg
gaccttgaattctatattctcaaattagaaaacttaaagtttatctgtgaaaattcaaat
gaatatcaaacatataagaattggtcaagtatgccatacaaggtgacggaaataagaaat
tgtgaccttgagcgtttatacaagcaaaatgaataa
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