Ruditapes philippinarum (Manila clam): 132725317 Help Entry 132725317         CDS       T09557                                  Name (RefSeq) DNA ligase 4-like   KO K10777   DNA ligase 4 [EC:6.5.1.1] Organism rphi  Ruditapes philippinarum (Manila clam) Pathway rphi03450   Non-homologous end-joining Brite KEGG Orthology (KO) [BR:rphi00001]  09120 Genetic Information Processing   09124 Replication and repair    03450 Non-homologous end-joining     132725317  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03400 DNA repair and recombination proteins [BR:rphi03400]     132725317 Enzymes [BR:rphi01000]  6. Ligases   6.5  Forming phosphoric-ester bonds    6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)     6.5.1.1  DNA ligase (ATP)      132725317 DNA repair and recombination proteins [BR:rphi03400]  Eukaryotic type   DSBR (double strand breaks repair)    NHEJ (non-homologous end-joining)     DNA Ligase 4 complex      132725317 BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  DNA_ligase_A_M DNA_ligase_A_N BRCT DNA_ligase_A_C RNA_ligase BRCT_2 DNA_ligase_IV mRNA_cap_enzyme Motif Other DBs NCBI-GeneID:  132725317 NCBI-ProteinID:  XP_060566406 LinkDB All DBs Position Unknown AA seq 917 aa AA seqDB search MDDAKPDSPAVTVASKVHFSEMCGLLEKISKTQGNDKKKRILKDFIDQWRKSHQVVHGSE KTTTDSFYPAMRLLLPHLEKERVAYGIKEHMFAKLLIEVLCLGKDSPDAHRLLNYKAPKT AKADVGDFASVVYFVLQNRCPSRGTLFIEEVNDCLDGIATNNVAKKKDAVRKHIVKLITN MSALELKWLTRMIVKELKIGLSQSSVLSVFHPDAEEFYNVNNNLEKVCRMMHDPSVRIHE IGISVFSPFTPMLGERASPDKVEKLMEGKPYFIETKFDGERMLLHKDAGEYKFYSRSGNE YTNIFGSNQYDGTLTQYIHDLFKPDVKTCILDGEMILYHPETETYATKAMNTDVKSTNRD GFQPCLHVFDILFLNDKVLTNLPLKERVKYLEKTFNTEKGRLIISEHKEAKTNQDCADAL NEAIDGREEGIMVKNPESVYRPNTRKGGWFKVKPEYVGGLMDELDVLVVGGYFGVGHRAG MMSHFLCAVAVPPKEGNQPEIFYSFCKIGSGYSKKELQDFNAKLVDHWQAFDKKNPPKCI ELASGFKEKPDAWIEPSKSAIVQIKAAEIIDSDRFRTGSTLRFPRVEKFRDDKEWYDCMT TDEIEQLKQKSGGKLAGGYVELGEEQEPAKKKRKIVSRAVRPTLGSQFRAADTSSVQQVS KLLEGKEICVINGPSSCPKQELEKKIVECGGSVVQNPGIGTYCVVVEKIVFRVNNMIKTN HYDIVKADWLIRCLDAKSLIPWSPGDMINVSEKTQKLFQQDFDEYGDSYVEETTPERLAQ VLAKIQEPDKVLSKTEIAEIEDKYFPDESPYGLFRTCKIYLDNNLVVGDRSTHIKDSSLD LLALELRFFGADMSNKLTADVSHVMVDESDLSRLSELKKERRTRHKKFHIVTPAWVKQCM EEGGVINERAFEPILTS NT seq 2754 nt NT seq  +upstreamnt  +downstreamnt atggacgacgccaaaccggattcaccagctgtcacggttgcatcaaaggtccatttctca gaaatgtgtgggttgctggagaaaatttctaaaacgcaaggaaatgacaagaaaaagaga attttaaaagattttatagatcaatggagaaaatcacaccaggttgtccatggatcagaa aaaacgacaacagattcattttatcctgctatgagactgttgcttccacatttagagaaa gagagagttgcttatggtataaaggagcacatgtttgccaaactgctgattgaagtattg tgtttaggaaaagacagtccagatgcccataggctccttaattataaggctccaaagaca gctaaagcagatgtaggggattttgctagtgttgtgtattttgttttacaaaaccgctgt ccaagtcgaggcacgttattcatcgaggaagtaaacgattgtctggatggtatagctaca aacaatgtggcaaaaaagaaagatgctgtcaggaaacatattgtaaagttgattacaaat atgtctgctctagaactgaagtggctcaccagaatgattgttaaggaactgaagattgga ttaagtcagtcatctgtattgtcagtgttccatcctgatgctgaagaattctataatgtt aacaataacttggaaaaagtgtgtagaatgatgcacgacccatcagtaagaatccatgag attggtatatcagtattttctccatttacaccaatgcttggagagagagcttcacctgat aaggttgagaagttaatggaagggaaaccatattttattgagactaaatttgatggggaa agaatgctgctacataaagatgctggtgaatacaagttctactctagaagtggtaatgag tatactaacatattcggatcaaaccagtatgacggcacattaacacagtatatacatgat ctatttaaaccagatgtaaagacttgtatccttgatggtgaaatgatcctgtaccatcct gaaacagagacatatgcaacaaaagcgatgaacacagatgtgaaatcaactaatcgtgat ggctttcaaccatgtctacatgtgtttgatattttatttctcaatgataaagtgttaact aatctaccactaaaggaaagagttaaatacctggaaaaaacttttaacacagagaaaggc agacttatcatcagtgaacataaggaggctaaaactaatcaggactgtgctgatgctctg aatgaggctatagatggtagggaagagggtatcatggtgaaaaaccccgagtctgtatat agacctaatacaaggaaaggaggctggttcaaggtcaaaccagaatatgtaggaggttta atggatgagttggatgtactggtagttggtgggtattttggtgttggtcacagggctggt atgatgtcacacttcctctgtgctgtagctgtcccaccgaaagaaggaaatcaaccagaa attttctactctttttgcaagatagggtcaggctattccaagaaagagcttcaagatttc aatgcaaagttagtggatcattggcaagcatttgacaagaagaatccacccaaatgtata gaactagcaagtggattcaaggagaaacctgatgcttggatagaaccaagcaagtctgca atagtacagataaaagcagcagaaattattgacagtgatagatttcggacagggtcaacg ttaagattcccgagggtagagaagttccgtgatgacaaagagtggtatgactgtatgaca acagatgagatagagcaattaaaacagaaatctggtggtaagttagctggtggttatgtt gaactaggagaagagcaagaaccagctaagaaaaagagaaaaattgtgtctcgtgcagtg aggcccaccctaggtagtcagttccgtgctgcagatacttcttctgtacaacaggtgtct aaactattggagggcaaggagatatgtgtgataaatggaccatcctcatgtcctaaacaa gaattagagaagaaaattgtagaatgtggtggctcagtggtacaaaatccaggtattggc acatattgtgtagttgttgaaaagattgtattcagggtaaacaacatgatcaagacaaac cactatgatattgtcaaagctgattggttaataagatgtctagatgccaaatcattgata ccatggtcacctggagacatgatcaatgtttccgagaagacacagaaattatttcaacaa gattttgatgagtatggtgacagttatgttgaggagacaacaccagaaagattggctcaa gtcctcgctaaaatacaggaacctgataaagtccttagtaaaacagagatagctgaaata gaagataaatatttccctgatgagtctccatatggtctttttagaacgtgcaaaatttac ctcgacaataacttagtagtgggagacagatcaactcatataaaagacagtagtttagac ttactggcactagagttacggttctttggagcagacatgtcgaataaacttacagcagat gtctctcatgtaatggtggatgaaagtgatctcagcagattatcagagttgaagaaagaa cgcagaacaagacataaaaagtttcatattgttacaccagcatgggttaaacagtgtatg gaagaaggtggtgtcattaacgaacgtgcatttgaaccaatacttacatcttga

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