Ruditapes philippinarum (Manila clam): 132725349
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Entry
132725349 CDS
T09557
Name
(RefSeq) TNF receptor-associated factor 2-like
KO
K03173
TNF receptor-associated factor 2 [EC:
2.3.2.27
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi04137
Mitophagy - animal
rphi04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
132725349
09140 Cellular Processes
09141 Transport and catabolism
04137 Mitophagy - animal
132725349
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
rphi03019
]
132725349
04121 Ubiquitin system [BR:
rphi04121
]
132725349
Enzymes [BR:
rphi01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
132725349
Messenger RNA biogenesis [BR:
rphi03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Stress granule specific factors
132725349
Ubiquitin system [BR:
rphi04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRAF proteins
132725349
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TRAF-mep_MATH
MATH_2
TRAF_BIRC3_bd
zf-TRAF
TRAF3_RING
zf-C3HC4
zf-C3HC4_4
zf-C3HC4_2
zf-RING_UBOX
TRAF2_zf
Spc29
zf-RING_5
zf-RING_6
Tweety
FliD_C
ADIP
zf-Nse
EXOC6_Sec15_N
Motif
Other DBs
NCBI-GeneID:
132725349
NCBI-ProteinID:
XP_060566439
LinkDB
All DBs
Position
Unknown
AA seq
542 aa
AA seq
DB search
MAADMQGGYSREIFRNGTLDPKFTCNFCSKVLREPVQSFCGHRFCKSCIHSNIRSGEQIK
CTQCEKEDNEAPSMISPEQIFPDNAIRREMQRLAVVCDSKDCPWKGTFKQYEEHFNACDY
KTQACPYCQQGVLRSHLQTHLERDCRKVELQCVDCGRKVLRERMTYHQLQECQKEKIQCP
VGCGEIERRHYQDHFREKKHEIWIAKEVSKLAATLEEVKGSELQLQTSVSESTAASFQMN
EKITLLEGQIQQLRTQTSVGTGISQLSDSGVGTGSSGASNIDAKIRQQVEMNLQSVNERL
DVKTGTFEGIASALHRELEKTITAVEKLERHRREMESNLEQSQNKIRSLERSLALKDMSM
AELELKAQSMEAASYDGTFMWRVHDFTKKHQDAVQGRTISIYSPPFYTTRRGYKMCARLY
PNGDGMGKGSHLSLFFVVMRGNYDALLKWPFSQRVTFCIVNQTGGEHVIDSFRPDPQSSS
FKRPTSDMNIASGCPLFIRLEMLQNPNHGFLKDDTLFLKIAVDTSGLTDPVSNLEERIKV
TA
NT seq
1629 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgatatgcaaggagggtattcaagagaaatctttcggaacgggacacttgat
ccaaagtttacttgtaatttctgcagtaaggtattgagagaacctgtccagtcattctgt
ggccatagattctgcaagtcatgtattcattcaaatatcaggtcaggtgagcagattaaa
tgcacacaatgtgaaaaagaagataatgaagctcctagtatgatttccccagaacagata
tttcctgacaatgcaattcggcgagagatgcagaggcttgcagttgtttgtgacagcaag
gattgcccatggaaaggcactttcaaacaatatgaggaacatttcaatgcatgtgattat
aaaacacaagcttgcccatactgtcaacaaggtgtccttagaagtcacttacagacacat
ctggagagagattgtagaaaggttgaattgcaatgtgttgattgtggcaggaaggtgctt
agagaaaggatgacctatcatcaactgcaggaatgtcagaaagagaaaatacaatgccct
gtaggatgtggagagattgaaagaagacactatcaagaccactttagggagaagaaacat
gaaatttggattgccaaagaggtttctaaacttgctgccactcttgaagaagtcaagggg
tcagagcttcaacttcagacatcggtttcagaaagtacagcagcttctttccaaatgaat
gagaagattacactacttgagggccagatacaacaactccgtacccagacaagcgttggt
actggaattagccaactctctgactctggggttggtactggaagtagtggtgcatcaaat
attgatgcaaagatacgacagcaggttgagatgaatttgcagtctgtaaatgaaagatta
gatgttaaaactggcacctttgagggaatagccagtgctttacatagagagcttgagaaa
actattacagcagtagagaagcttgaaaggcacagaagggaaatggaatctaaccttgaa
cagagtcagaataaaatccgatctttggaaagatcattggcactaaaagacatgtcgatg
gccgagttggaactgaaagcacagtcgatggaagctgctagctatgatggaaccttcatg
tggagggttcacgacttcaccaagaaacaccaggatgctgtccaaggacggacaatcagt
atctactcgccaccattctatacaacacgtcgaggttataaaatgtgtgccaggctttac
ccaaatggagatggaatgggcaagggatcgcatctttccttgtttttcgtggttatgaga
gggaattatgatgccctgttaaaatggccatttagtcagcgtgtgaccttctgcattgtt
aaccaaaccggaggcgaacatgtgatagattcattcagacctgaccctcaaagctcgtca
ttcaagcgaccaacttctgatatgaacatcgcatcagggtgtcccctgtttattcgcctt
gagatgctgcaaaacccaaatcatggttttttgaaagatgatacattattcttaaagata
gcagttgacacaagtggtcttacagatcctgtgtcgaatttggaggaaaggattaaggtc
acagcttag
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integrated database retrieval system
