Ruditapes philippinarum (Manila clam): 132737165
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Entry
132737165 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132737165
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132737165
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132737165
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
DEAD
ResIII
Helicase_C
CARD_2
RIG-I_C
CARD
AAA_19
AAA_22
SLFN-g3_helicase
Helicase_C_2
DUF2719
DUF1284
DUF87
Motif
Other DBs
NCBI-GeneID:
132737165
NCBI-ProteinID:
XP_060580399
LinkDB
All DBs
Position
Unknown
AA seq
1001 aa
AA seq
DB search
MASDIETRLRKYRHEFEKCLKDPSIVSHLLAKSVITDVDASRIKNLYIDKESVKASQELL
DAVFTSEAPGKWKSFVDSLESAEYPYLKELLSYQNRYDAFSSSRAQKILGLFTPYLEQII
CAHEFVSELRSRGVINAADKELILKTYETKGDIYSTMVLLDRMQCRKSPQDWYYEFLDLL
MMKKCEHIVKEMEPDFIENPSSFMPKLDRGEGFKDSNDLGAPQSLTMRQDSHLTSTEYQN
DSLQTNLKEFNIKPNVTKSLPVDIYRRANRKPGKTDEQDNPEKVDDDDDDEDSMGSDYDN
TSVEAEALGSNTAAPFKLRKYQLELAENAVLGRNTIICAETGSGKTWVALHIVQQHLQNA
RNGQRKVVFMARTGALIKQQSDRFKTYLPQFQTRLITGEDDQSRMLNMFLENYDILCFTP
QILVNNLEDNVIKSLSEFSLLILDECHHTRGDGPYSTLMRKYLVEKSKTKKEMPQVVGLT
ASIGVGKSRTDQESVDYILRVCSCLDVRIISTVERNFKELKKHVSIPDEETIQLVKQKDD
PCKHFILTAMEETEDMLQDNSLMQPDMIDLMDTQPRDRESQEYNKWTVDVMRAALLKVDD
YDVSRDISSCAKYLNIYNSALEVNKLLLSRDVIKYLAEKHRLEGENKDKLTEMEKKLFKN
LQNVQKTINVKGKNTENPNVRILSDTLRKMLDDKGDDSRAMVFVKARATCRSLAAFLDRD
LQSSGVKASPLYGKENRGGDDGMTESQQTEILDKFRSGFFKVLVCTSVGNEGIDVPDCNI
VLSYEYSGDEITKIQMKGRARKKKATTITMGSDKVVEQEMINTYKAAMMYRAMNTVKQLD
PKFINMKVNAFQSEETHKYRFKAEVEKLKKGRKSDEDYAILCGRCNTFACYVSDVRQLGH
DHIVIDKDFADKITRKEHKKPKTYDGLHKKYKMYCKKCPIDWGIIGLRDGLDCMILKIIN
FKFRNLRTHGVSTYKKWIDVPCAVPEIKLEDLPRLLGPEET
NT seq
3006 nt
NT seq
+upstream
nt +downstream
nt
atggcgtcagatattgaaaccaggttgcggaaatatcgtcatgaatttgagaagtgttta
aaagatccatctattgtttctcaccttttagcaaaatctgttataaccgacgttgatgct
tcaagaataaagaatctgtacatagacaaagagtcagtaaaggcatcccaagagttgtta
gacgcagtttttacttccgaagctcctggtaaatggaaatcatttgttgattctcttgaa
agtgcagaatatccttacctgaaggaattactgtcatatcaaaatagatatgacgcgttt
tcatcatcacgtgctcagaaaatcttgggtttgtttacaccatatcttgaacaaatcata
tgtgcacacgagtttgtgtctgagttgaggtcaagaggtgtcataaatgcggctgataag
gaacttatccttaaaacatatgaaactaaaggcgacatatactcgacaatggttctctta
gatagaatgcagtgtagaaaatcgccccaggattggtattatgagttcctagacttattg
atgatgaagaaatgcgagcatatagtgaaagaaatggaacctgattttattgaaaatcct
tcgtcatttatgccaaagctagacagaggtgaaggtttcaaggattcaaatgacttagga
gcacctcaatcactgacaatgaggcaggactcacacttgacatccaccgagtatcaaaat
gacagcttacagacgaatttaaaggagttcaatataaaacctaacgtgacaaaatctctt
ccagttgatatatataggcgagcaaaccgcaaacctggaaagactgatgaacaggacaac
cctgaaaaagtagatgatgatgatgatgatgaagattccatgggatctgattatgataat
acaagtgttgaggctgaggccttgggctcgaacacagctgctccatttaaattgcgtaaa
tatcaattagaacttgcagaaaatgcagttcttggaagaaatacaatcatttgtgcggaa
acaggatctggaaaaacctgggttgctctgcatatcgtacagcagcatttacaaaatgct
aggaacggtcaaaggaaggtagtgttcatggccaggactggggctctaatcaaacaacag
tctgacaggtttaaaacttatcttccacagtttcagactcgtttaataaccggagaagat
gaccaatcaaggatgttaaacatgtttttagaaaattacgacatactatgtttcacacct
caaattctagtaaataatctagaagacaacgtcataaaaagcttgtcagaattttccttg
ttgatacttgacgaatgccaccatacgagaggagatgggccttacagtacgctaatgaga
aaatatctagtggaaaaatccaaaacaaaaaaagaaatgccacaggtagtaggtctgaca
gcctctattggcgtgggcaaatctcgaacagatcaggaatcggttgattacattctgagg
gtatgttcttgtctggacgtgagaataatttcaacggtagaaagaaattttaaagaatta
aagaaacatgtcagcattcctgatgaagaaacaatacagcttgtaaagcagaaagatgac
ccttgtaaacattttatattgactgcaatggaagaaactgaagatatgttgcaagacaat
tcattgatgcaacctgatatgattgatcttatggacacgcagccacgtgaccgagagtct
caagaatacaataaatggacagttgatgtaatgagagctgcacttttgaaggtggatgac
tatgatgtgtccagagatataagtagttgtgcaaaatacttgaatatttacaactcggcc
ctagaggttaacaaactcttgctttcgagagatgtcattaagtatttggctgaaaaacac
agacttgaaggggaaaacaaagacaaactaactgagatggaaaaaaagctgttcaaaaat
ctgcaaaatgtgcagaaaacaattaacgttaaagggaaaaacaccgaaaatccaaatgtg
aggattttgagcgacaccttacggaagatgcttgatgacaaaggggacgactcaagggcc
atggtttttgtgaaagcaagagctacttgcagatctcttgctgcatttttggacagggat
ctccagagtagtggagtaaaagcgagtccattatatggaaaggaaaatcgtggtggagat
gacggaatgacagaaagtcaacaaacagagatattagacaagtttcgcagtggattcttc
aaagtactagtatgcacatctgttgggaatgagggtatagatgttcctgattgtaatatt
gttcttagttacgagtattccggagatgaaataacaaaaatacaaatgaaaggtcgtgct
cgtaagaaaaaagcgacaacaatcactatgggaagtgataaagtagtagagcaagaaatg
atcaatacatacaaagctgcaatgatgtatagggccatgaatactgtaaaacagttggat
ccaaaattcatcaatatgaaagtcaatgccttccaaagtgaagaaacgcataaatacaga
tttaaagcagaagttgagaaattgaaaaagggaaggaagtctgatgaagattacgcaatt
ttgtgtggaagatgcaacacttttgcttgttatgtctctgatgtaaggcagcttggacat
gatcatatcgtaattgataaagatttcgctgacaagattacaagaaaagaacacaagaag
ccgaaaacatatgacggcctacacaaaaaatacaagatgtattgcaagaaatgcccaata
gactggggtataattggactgagagatggcttagactgcatgatcctaaagatcatcaat
ttcaagtttaggaatttgcgaacacatggtgtgagtacctacaagaaatggatcgatgta
ccatgcgctgttcctgaaataaagttggaagatcttcctagattgttaggaccagaggaa
acataa
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