Ruditapes philippinarum (Manila clam): 132737624
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Entry
132737624 CDS
T09557
Name
(RefSeq) isoleucine--tRNA ligase, cytoplasmic-like
KO
K01870
isoleucyl-tRNA synthetase [EC:
6.1.1.5
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Pathway
rphi00970
Aminoacyl-tRNA biosynthesis
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09120 Genetic Information Processing
09122 Translation
00970 Aminoacyl-tRNA biosynthesis
132737624
09180 Brite Hierarchies
09181 Protein families: metabolism
01007 Amino acid related enzymes [BR:
rphi01007
]
132737624
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
rphi03016
]
132737624
Enzymes [BR:
rphi01000
]
6. Ligases
6.1 Forming carbon-oxygen bonds
6.1.1 Ligases forming aminoacyl-tRNA and related compounds
6.1.1.5 isoleucine---tRNA ligase
132737624
Amino acid related enzymes [BR:
rphi01007
]
Aminoacyl-tRNA synthetase
Class I (U)
132737624
Transfer RNA biogenesis [BR:
rphi03016
]
Eukaryotic type
Aminoacyl-tRNA synthetases (AARSs)
Multi-aminoacyl-tRNA synthetase complex (MSC)
132737624
Prokaryotic type
Other AARSs
132737624
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
tRNA-synt_1
Ubiquitin_IARS1
Anticodon_1
DUF5915
tRNA-synt_1g
UN_NPL4
tRNA-synt_1e
Motif
Other DBs
NCBI-GeneID:
132737624
NCBI-ProteinID:
XP_060580939
LinkDB
All DBs
Position
Unknown
AA seq
1292 aa
AA seq
DB search
MAQPVPEKISFPGEEENILKYWKEIDAFKTSLKLSKGKPRYTFYDGPPFATGLPHYGHIL
AGTIKDVVTRWAHQSGFHVERRFGWDCHGLPVEYEIDKTLGIKGPEDVAKMGIEKYNAEC
RKIVMRYSSDWENIVTRLGRWIDFENDYKTMYPWFMESIWWVFKELYNKGLVYKGSKVMP
FSTACNTPLSNFESGQNYKDVVDPAVIVSFQLEETPGVSMIAWTTTPWTLPSNLSLCVNP
TMDYVKVKDNNTEKVYIMMEARLEALFKNPEEYTVLEKFQGKVLENKRYKPLFPYFSYMG
KKSGAFRVLCDSYVTAESGTGVVHQAPYFGEDDQRVCLKYGIITRDSEMICPVDASGKFT
ADVTDFQGLYIKDADKKIMKHLKEVGHLVHQSETKHSYPFCWRSETPLIYKAVPSWFVRV
EQAQEQLLNNNSQTYWVPDFVKEKRFGNWLREARDWAISRNRYWGTPIPLWVSDDLEEVV
CVGSIEELEKLTGVKDIKDLHRETIDKLTIPSKLGKGVLKRVSEVFDCWFESGSMPYAQV
HYPFENKKAFDDAFPADFIAEGIDQTRGWFYTLLVLSTLLFGKPPFKNLVCNGLVLAADG
QKMSKRKKNYPDPLEVVHKYGADALRLYLCNSPAVRADSLRFREDGVKDILKDVFLPWYN
AYRFLMQNVERLQREEGMSLEYHEEKLGSSENYMDRWILSFTQSLIKYVREEMQAYRLYT
VMPRLVKFVDELTNWYVKMNRKRLKGDGGASDCLDALTTLFAVLFSMSKVMAPMIPYITE
LMYQNLKHLLDPEAMKGQDTRSVHFMMIPEPREDLIDTHIESAVASMQSVIELGRLVRER
NTLPIRYPLKEVVAIAGDQDVLKDIQSLESYILEELNVKKLTTTTDKEKYGARLHAEPDH
RVLGAKLKQQFKAVTKAIQELTDAQLMDFQQTGEIDVLGNKLVEGDLRLMYQFDGAKGSS
TYDAHAYPHVLVLLEVTPDKSMLDEGLARDVVNRIQKLRKDASLMPTDDITVYYDTTPEL
GKVITEFSDFIFSTIKQPLVPYPVPAGQKPIIVSDPKKKDYKVKDNKLEMAIVRRGASGA
GSTSSPAPVVQALPPAPVKNGVKPHCKFVNVQLCGMSSHEGREGSNQATVLLENPQGQFA
LSSNSLKEQVQSVFGVRGRKVEVYSDANIQTPLSSSGNISNLNTKTLYVVACTGEQCGKQ
PVSSLSSPVCHFTNIEYTDAGGKNCRGTLLLENPRGDTCTMSQLQSQVQVLAGTNGRQVK
LYRKPGQKEEVLEQNVKNLLDLHSETLYAVCL
NT seq
3879 nt
NT seq
+upstream
nt +downstream
nt
atggcgcagccagtgccggagaaaatctctttcccaggagaggaagaaaatattcttaaa
tactggaaagaaatagatgctttcaaaacttcacttaaactttccaaaggaaaaccaagg
tatacattttatgatgggcccccatttgcaactggacttccccattatggacatatttta
gcaggaacaatcaaagatgttgtaacaagatgggcacatcagagtggtttccatgttgag
agaagatttggatgggattgtcatggtttgccagttgaatatgaaattgacaaaacactt
ggaattaaaggaccagaagatgtggccaagatgggaatagagaagtataatgctgaatgc
cgcaagattgtcatgagatattcttctgattgggagaacattgtgactcgacttggaaga
tggattgactttgagaatgactataagaccatgtatccctggtttatggagtcaatctgg
tgggtgttcaaggaactgtacaacaaggggcttgtctataaaggatccaaggtaatgcca
ttttctactgcctgtaatacaccactctcaaattttgagtcgggacagaattacaaagat
gtggttgaccctgcagtaattgtcagtttccagctggaagagacaccaggtgtgtcaatg
attgcctggacaaccactccatggacattgcctagcaacctgtcactgtgtgtgaatcca
accatggactatgtcaaggtcaaagacaataacacggagaaggtttacatcatgatggag
gctagattagaagctctttttaaaaatcctgaggaatatacagtcctagaaaaatttcaa
ggaaaggtgcttgagaataaaagatacaaaccacttttcccatacttcagttatatgggg
aagaagtctggagcattccgtgtattatgtgacagttatgtgacagcagagagtggtaca
ggtgtagtacatcaggccccatacttcggagaggatgatcagcgtgtatgtttgaagtat
ggaatcatcaccagagactcggagatgatctgtcctgtagatgctagcggcaagtttact
gctgatgttacagacttccagggactgtacatcaaggatgctgataagaagatcatgaaa
catttaaaggaagtaggtcatcttgtacatcagagtgagacgaagcatagttacccgttc
tgctggcggtcagagacacctcttatatataaagctgtaccaagctggtttgtgagggta
gaacaagcacaagaacagctgttaaataataactcgcagacatactgggtaccagatttt
gtaaaagagaagagatttggaaactggttgagagaagctagagactgggctatctctcgt
aaccgttactggggtacccccatcccattgtgggtgtctgatgacctagaagaagttgtc
tgtgtgggttccattgaagaactggaaaaattgacaggggtcaaggacattaaagatcta
catagagaaacaattgataagttgacaattccttcaaagcttgggaagggagtgttaaaa
cgtgtatcggaggtgtttgactgctggtttgagagtggtagcatgccttacgctcaagtt
cactacccgtttgaaaacaagaaagcatttgacgatgcattccctgcagactttattgct
gaaggcattgaccagactcgaggatggttttacacattgctagtgttgtctaccttgtta
tttggaaagccaccattcaagaacttagtgtgcaatggacttgtcttggctgcagatgga
cagaagatgagtaaaagaaagaagaattacccagatccccttgaggttgttcataaatat
ggtgcagatgcacttaggttatacctgtgtaactcaccagctgtgagagcagattctctc
aggtttagagaagatggtgtaaaagatattctcaaggatgttttccttccatggtataat
gcctacagatttctcatgcaaaatgtggagagattacaaagggaagagggaatgtcatta
gagtaccatgaggaaaagttgggaagctctgagaattacatggatagatggattttgtct
tttacacagtcactcatcaaatatgtaagagaagaaatgcaagcgtatagactatacaca
gtaatgccacggttggtaaaatttgttgatgaactgaccaactggtatgtaaagatgaac
aggaagagactaaagggagatggtggagctagtgactgtcttgatgccctcacaacattg
tttgctgtactcttctctatgtctaaagttatggcacctatgataccatacatcactgaa
ttaatgtaccaaaatttaaagcatctactagacccagaagcaatgaaaggacaggacact
cgaagtgtgcacttcatgatgatcccagaacctagggaggatttgattgacacgcacatt
gagtcagctgttgccagcatgcagtcagtgatagaacttggacgtcttgtcagagaaagg
aatacattacctatccggtatcctttaaaagaagtagttgccatcgctggtgatcaagat
gtgttgaaggatatccagtcactggaatcttatatacttgaggaattaaatgtaaagaaa
ctaaccactactacagacaaggagaaatatggtgcccggcttcatgctgaaccagaccat
agagtgctgggagccaaattgaaacaacaatttaaagcagtgactaaagccattcaggag
ttaacagatgcacagctgatggacttccagcagacaggagagattgatgtgctcgggaat
aaactggtggagggagatcttcgacttatgtaccagtttgatggagccaagggatcatca
acatacgatgctcatgcctacccacatgtgttggttctgcttgaagtgacaccagacaag
tccatgttagatgagggtctagcaagagacgttgttaaccgtattcaaaagctgaggaaa
gatgccagtttaatgcccacagatgacatcacagtttattacgatacaactccagaactt
ggcaaagttatcacagagttctctgactttatcttctctaccatcaaacaacctctagta
ccttatcctgtaccagcaggccagaaacctattattgtgtcagatcctaaaaagaaagac
tacaaggttaaagacaacaaattggagatggctattgttcggaggggtgctagtggtgct
ggctcaacttcatcaccggctccagtagtacaagccttgccaccagcccctgttaaaaat
ggcgtgaaacctcactgcaaatttgtcaacgtacagctgtgtggaatgagcagtcatgag
ggtcgggaaggctcaaaccaggcaacagttttgttagaaaaccctcagggtcagtttgcc
ttgtcttctaattcattgaaagaacaggttcagtctgtgtttggtgttaggggaaggaaa
gtggaagtgtattcagatgctaatattcagacaccattgtcatcatctggaaatatcagc
aatttaaacactaaaactttgtatgtagttgcatgcactggtgagcagtgtggaaagcag
cctgtcagcagtctaagctccccggtctgtcatttcaccaatatagagtatacagatgca
ggtgggaagaattgtagaggaacattacttctagagaatcctagaggtgacacctgtacc
atgtcacaattacaatctcaggtgcaggttttagctggaactaatggcagacaagtaaaa
ttgtatagaaagcccggtcagaaagaggaggttctggaacagaatgttaagaatcttcta
gatcttcattctgaaacactatatgctgtatgtctatga
DBGET
integrated database retrieval system
