Ruditapes philippinarum (Manila clam): 132740903
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Entry
132740903 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like isoform X1
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132740903
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132740903
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132740903
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CARD_2
DEAD
ResIII
RIG-I_C-RD
Helicase_C
RIG-I_C
AAA_22
AAA_19
Yippee-Mis18
AAA_25
Malic_M
Motif
Other DBs
NCBI-GeneID:
132740903
NCBI-ProteinID:
XP_060584941
LinkDB
All DBs
Position
Unknown
AA seq
1090 aa
AA seq
DB search
MEVKERLLFYSQEIIRCIKEPSVISHLEADSIIPSDDCSKMKKIFIDADPFKANEMMIDC
LLKSSAMGKWKSLLTALENAEYLYIKSLLETDGKPSVKDERERAIIRVFISYLEKTIDAM
DIVAELFSRKVINDTDVDFIRAQYQNKGNTYATIVLLDRMQCRLAPDEWYYQFLDVLVQK
NLKHIVKEIEPDFLQNPKQFRSCHESVEKYVDCDKKDMTVEASETKVPVSIKSDDIQEHV
LTEYSSVATDMASHCMVSEIDMNDCKSSSSSSDFEDALEEIDEHVYTPHALEGDDIESHT
NEAKDTCISLDRFALNSCVENTDRIETSQDDITELNATIQLGERAPPEGRNFEPDVTAEI
TTQNDTDVQNDEIPLTEELTSEAEESDDFSDADETTESKSLEETLYPFQHELAEKALAGE
NTIIVAPTGSGKTWVATHIIDRHLNMPTEGGKKRRVVFMARNGILVEQQKNFISTRLPYA
NVKHLKGDTDEAMMLKAFLEDYDIFLFTPQILVNNLDTDVKSLSAFSLMVFDECHHTIGG
QPYNMLMKKYLLEKSNGNKNLPQIIGLTASIGTGRAKTEKDALEHIFNVCASLDVRCLST
VEEHTEDLSKHVSVPKEEKISMQMRPTDQCKSILLMAMKKTHDLFEDLAVTEPKLIQLIH
KCPKNVEDKEFGKWIAEITKAAESLTRGRGRNIISCGKYLQIYNNALEINRLLRTTDVAL
YLANQLAEEAEHPETFTREEQRLFDALKEIQKDLRRVESDNPNVHVLSNILSNLFAGKEA
DANSRAMVFVHARATCRALADFLNEELESIYVKASPLTGKETRGIDKGMTEEDQIQLLEE
FREGVFKVLVATSVGMEGLDVPDCNMTLNYNFNADEITKIQMSGRSRKADGKAVMIATNT
QFDKDRVVMYRLKLMTWAVATFKGLDAKSIDRQVISLQKKMMEEYKWHLQTMELSKNRKS
DAFDYEIHCKKCGTYICNTSNLRKFDTSYIVALQGFEEKIKREEHATRANMGVLKKKFKM
FCMHCSKAWGVIGVKGDLEFYILKLENLKFICQNTENDDAYETYKKWSSMPYKVKEISNC
DLDRLYRQTE
NT seq
3273 nt
NT seq
+upstream
nt +downstream
nt
atggaagttaaggaacgattgttgttctacagtcaggagataataagatgcatcaaagaa
ccatccgtcatttctcatcttgaggcagattcaattataccttctgacgactgttcaaag
atgaagaagatatttatagatgccgatccttttaaagctaatgaaatgatgatcgactgt
cttctgaaatcatctgcaatgggaaaatggaaatcattactgaccgctttggaaaatgca
gaatatctctacatcaagtccttactggaaacggacggcaaaccaagtgtgaaagatgaa
cgcgaaagggcaattatccgagtattcatatcctacctagagaagactattgatgcaatg
gatatcgttgctgagcttttttcaagaaaagttataaacgacacggatgtcgactttatt
cgtgctcagtatcagaataaagggaacacgtatgcaacaatcgtgcttttagacagaatg
caatgcagactggctccagacgaatggtattatcaatttctcgatgtattggttcaaaag
aacctcaaacacattgtcaaagaaatcgagccagattttttgcaaaaccccaagcaattc
cgatcttgtcatgaatcagtagagaaatatgttgactgtgataaaaaagacatgactgtt
gaggcatctgaaacgaaagtacctgtatccataaagtccgatgacattcaagaacacgtt
cttacggagtattctagcgtagctactgacatggccagccattgcatggtttcagaaata
gacatgaatgactgtaaatcttcttcaagttcttctgactttgaagatgctctagaagaa
attgacgaacacgtttatacacctcatgctcttgaaggagatgatattgagtcacatacg
aatgaagcaaaagacacatgcatatctctggacagatttgccttgaactcttgcgttgaa
aatacagatagaatcgaaacctctcaagatgatataacagagctgaatgcgactatacaa
cttggagaaagagcacccccagagggacggaactttgagcctgatgtaacagctgagatt
acaacacagaacgatacagatgttcaaaacgatgaaattcctttaacagaagaactgaca
agcgaggcagaagaatctgacgatttcagtgacgcagatgaaacaacggagtcaaaatct
cttgaagagacattgtatcctttccaacacgaacttgcagagaaggcattagcgggcgaa
aatactatcatagttgctccgactggaagtggaaaaacatgggtggcaacacacattatt
gatagacatttaaatatgccaacagaagggggaaagaaaagaagagttgtcttcatggct
cgcaatggaatacttgtagagcagcaaaagaacttcatctccacgcgattgccttatgcg
aatgtcaaacacctaaaaggagacacagatgaggcaatgatgttgaaggcatttcttgaa
gattatgacatattcctattcacaccacaaattcttgtcaacaatctagacacagatgtt
aaaagtttgtcggcattttcattaatggttttcgacgaatgccaccatactatcggcggt
caaccttacaacatgcttatgaaaaagtatcttcttgaaaaatcgaatggaaataaaaat
ttaccacagatcattggtctgacagcatctattggtacaggaagagcaaaaacagagaaa
gatgcacttgaacacatatttaatgtgtgtgcaagtttagatgttagatgtttgtctaca
gtagaagaacacacagaagatctatcaaaacatgtcagcgttcctaaagaagaaaaaata
tctatgcaaatgcgaccaacagatcaatgtaaaagcatacttttaatggcaatgaagaaa
acgcatgatctttttgaagatttagctgtgacggaacctaaattgatacaattaatacac
aaatgtccaaagaatgttgaagacaaggaatttggaaagtggatagcagagataactaag
gcagctgaatcactcacaagaggtcggggaagaaatataatttcctgtggaaaatatctt
caaatttacaacaatgctttagagataaacaggctactgagaactactgatgttgctctc
taccttgcaaatcaactcgcggaagaagctgaacacccagaaacctttacaagagaagaa
caacgtctgtttgatgcactgaaagaaatacaaaaagacttgagaagagtggaatctgac
aatccaaacgtacatgtcttaagcaacattttatcaaatctctttgctggaaaggaagct
gatgctaactcaagagccatggttttcgttcacgcacgggcaacatgcagagctttagca
gattttctcaacgaagagttagagtctatttatgtaaaagccagtcctcttacaggaaaa
gaaaccagaggaatcgataaaggtatgactgaggaagaccaaattcaactattggaggaa
tttagggaaggtgttttcaaagtgctagttgcgacatcagtcggaatggagggactagat
gtaccagactgtaatatgacgctaaattacaacttcaacgctgacgaaataactaagatt
caaatgtcagggcgcagcaggaaagcggacggcaaagcagttatgatcgctactaacacc
cagtttgataaagacagagtagttatgtacagattgaaattgatgacatgggcagttgca
actttcaagggtttggatgctaagtctatcgatagacaagtaatttctttgcagaagaaa
atgatggaggagtacaaatggcatctacaaactatggagctgtcaaaaaacagaaagtct
gatgcatttgattatgaaattcactgcaagaaatgtggcacatatatttgtaatacttct
aatctccggaagtttgatacatcctatattgttgctttgcaaggctttgaagaaaaaata
aaaagagaagaacatgccacaagggctaatatgggtgtattgaagaaaaaatttaagatg
ttctgtatgcattgttcaaaagcctggggagtgattggagttaaaggtgatcttgaattc
tatattctaaaattagaaaacttgaaatttatctgtcaaaacacggaaaacgatgatgca
tacgaaacatacaaaaaatggtcaagcatgccgtacaaggtgaaggaaataagtaattgt
gatcttgaccgtttgtaccggcaaactgaataa
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