KEGG   Ruditapes philippinarum (Manila clam): 132741048
Entry
132741048         CDS       T09557                                 
Name
(RefSeq) TNF receptor-associated factor 3-like isoform X1
  KO
K03174  TNF receptor-associated factor 3
Organism
rphi  Ruditapes philippinarum (Manila clam)
Pathway
rphi04620  Toll-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:rphi00001]
 09150 Organismal Systems
  09151 Immune system
   04620 Toll-like receptor signaling pathway
    132741048
SSDB
Motif
Pfam: TRAF-mep_MATH MATH_2 zf-TRAF Sina_ZnF zf-C3HC4_2 zf-C3HC4 zf-RING_UBOX RING_XB3-XBAT31 zf-C3HC4_4 TRAF3_RING zf-RING_2 zf-RING_5 CALCOCO1 zf-C3HC4_3 CENP-F_leu_zip CENP-H DUF3829_2nd Tab2-like_N zf-C3HC4_5 zf-TRAF_2 THOC7 Prok-RING_4 Golgin_A5
Other DBs
NCBI-GeneID: 132741048
NCBI-ProteinID: XP_060585112
LinkDB
Position
Unknown
AA seq 567 aa
MYIIEATSGHMMTSNSSLELQENPKFFRHDSKYDCLVCKEVLKEAMQTSCGHRICERCIA
KLFEGKSEPVMCPANEEDCEPQCRTDITPDPSGRREIRNLKVYCDYKDKGCDEVVRWKDL
QGHMSNCKFKPITCPNHEFGCETSLTSTNFQQHIQNECEYRQKECQFCKIFVPAKLLQKH
FDDECLVVQLACPYSCGSQPMARTELRNHMETCPSKPKECRFKSVGCDFKGTDEQVQHHL
VTDLNKHLENVTLYTANMEVQSIGIRRELQEVTAERDQLRQEVNVVRQEMAVMKTNFEKV
QNSNKELKLKMVSLTERVIHLEKQSENAAKKDVVERHDRDVRTMQTSLTQVRAQVVQLER
LSLNEGGRSGSGETAPAPELKRRLDMHDSQFAQLDVQMAELDLRFQILETASYDGTLMWK
LRDYARRKQDAVQGRTLSLYSQPFYTHRYGYKMCARVYLNGDGMGKGSHMSLFFVVMRGE
YDNLLPWPFQQKVTMTLLDQETGQCNLSDSFRPDPTSSSFRKPTTDMNIASGCPLFVSHA
VLETAKYVKEDTIMIKFQVDLANLNHP
NT seq 1704 nt   +upstreamnt  +downstreamnt
atgtacataatagaggctaccagtgggcacatgatgacaagtaattcatcgttggaactg
caagaaaacccaaagttttttcgacatgattccaagtatgactgcctggtatgtaaggaa
gtgctcaaggaggcaatgcagacaagctgtgggcacaggatttgtgagagatgtattgcc
aagttatttgaaggaaagtcagaaccagtcatgtgtcctgctaatgaagaagattgtgag
ccacaatgcagaactgatataacaccagatcccagcggacgaagggaaataaggaatttg
aaagtttattgcgattacaaagacaagggttgtgatgaagttgttagatggaaagacctt
caaggtcacatgagcaattgcaagtttaagccaattacatgtccaaaccatgaatttgga
tgtgaaacatcactgacgagtaccaattttcaacaacatatacaaaacgaatgtgaatac
aggcaaaaagagtgtcagttttgcaaaatctttgtgccggccaagttgttgcaaaaacat
tttgatgacgaatgtttggtagtccaacttgcgtgcccttacagttgtggtagtcagcct
atggctagaacagagttgagaaaccatatggaaacatgcccaagtaaacctaaagaatgc
agatttaagtctgttggatgtgattttaaaggaacagatgaacaggttcaacatcattta
gtgacagatttaaataaacatttagagaatgtgactctatatacagcaaatatggaagtt
cagagcattggaatcagaagggaattacaagaggtaacagcagagagggatcaattaaga
caagaagtgaatgttgttagacaggagatggcagtaatgaaaacaaacttcgagaaagta
caaaattcaaacaaagaactaaagttaaagatggtctcactgacagaaagagtaatacat
ttagaaaagcaatcagagaatgcagcaaaaaaagatgttgttgaacgccatgatagggat
gtaagaacaatgcagacatccttgacccaagttcgagcccaggtggtacaacttgaaagg
ctgagcttaaatgaaggaggacgttcaggatcaggagaaactgccccagctccagagtta
aagcgtagattagacatgcatgacagccagtttgcacagctagatgttcagatggcagaa
ctggacctaagatttcagatcctggagacagcaagctacgatggtacactaatgtggaag
ttgagggactatgctcggagaaaacaagacgcagttcaagggagaacactctcattgtac
agtcagccattttacacccacagatatggttataagatgtgtgctcgggtgtatcttaat
ggagatggtatgggaaaaggaagtcacatgagcctgttctttgttgttatgagaggtgag
tatgataacctgttgccatggccgttccagcagaaggttacgatgacacttcttgaccag
gagactggacagtgcaacctttctgactcgttcagaccagatccaaccagtagcagtttc
aggaaaccaacaacagacatgaatattgcttctggatgtcccctatttgtttctcatgct
gtgttagaaacagcaaagtatgtgaaagaagatacaatcatgattaaatttcaggtggat
ttggcaaatctcaatcatccctaa

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