Ruditapes philippinarum (Manila clam): 132742512
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Entry
132742512 CDS
T09557
Name
(RefSeq) antiviral innate immune response receptor RIG-I-like
KO
K12646
ATP-dependent RNA helicase DDX58 [EC:
5.6.2.6
]
Organism
rphi
Ruditapes philippinarum (Manila clam)
Brite
KEGG Orthology (KO) [BR:
rphi00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
rphi04054
]
132742512
Enzymes [BR:
rphi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
132742512
Pattern recognition receptors [BR:
rphi04054
]
Cytoplasmic pattern recognition receptors
RIG-I-like receptors
132742512
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RIG-I_C-RD
ResIII
DEAD
DUF4559
RIG-I_C
Helicase_C
SWI2_SNF2
AAA_34
DUF5659
Motif
Other DBs
NCBI-GeneID:
132742512
NCBI-ProteinID:
XP_060586933
LinkDB
All DBs
Position
Unknown
AA seq
1085 aa
AA seq
DB search
MSDTENNSDTEDDEDLDNPDYKNWVRAAKGLEYLQQGLAPFVSTEITENVTTFFERLRLA
SGQVNCNQCNKANLFADHPGGICISRYKNKCYCNIQINNRRLCPNGVCSKLYHFIVQEHR
SNDPLWRNSDIAKWCSDVWFVAKCFMTCCSTGNSAQSTDAAGLLSIVVNAKFFQPRLTCR
IDPGKDDFSKARNARNEILHKAEIKLSEQELFHYIDLFVAVLHDPKTLLKDKNAQDAVKK
LLKLKDNQIHISMGEKKKILLDTEEALIALKTIGEEKAIGNISTTKDVSIQCIKDKKVEV
LDDLEKVKADVISGSEIEQKIIKTVEDVAVIDERLKHVEEYLENINNQEIDRCISRSHSK
DESQDTGAASEHYYGSTKIKTDEDTIVNVEDTDVSLRDYHKELAQEGLKGANVVIMAPTN
SGKTRVACKITQEHLRRKRDGKVIFLVENETLAYQQGKVFSKLLPAYRTKVISGTVQRDK
KMFLKDFIHIRDILVVTAQILLNSLKTKEIDSLEKFSLIVFDECHHAKGFHRYNEIMGHY
IDMKFQNVSPLPQVVGLTASLGIGGNSDHKAAMDHMEKLLTNLDAAFLCTVRQNKEELQK
IENKAKEHIVVTEGRVDDLYKKAILENMHAIDDYMINHQSLSEVPPASELKNKCRVPSTA
GDASFQNWLSDFKKALCDVDSKRVRRMMFPCFEHLEIYNKSLMVHADARIKDARAVLVEF
MEKQYKADETCENETDKMLLELYECLKAKSFDNEPENPKLLKLGELIINILGNDKRAKGI
VFVESRDLAKAISNWMNETDNLKQFYAKKCVGQAVSVDKGGMTRAKQRNVLEYFRGGRHK
LIIATSIVEEGIDITMCNLVIRYEHVTNEIVRLQSRGRARAANSKYYVLTEARSWIVGKE
QKIEMLEDLINQIVPQLQAKIESDPLAWQQRLTERQKYMKQLEEERNERDRRAKMAQGVK
ELKCLKCLKFICLSSDIRRIKDTQHVVIDEDVQKRITWTRKPIPKFKNDDLKFDGTTLCG
NSTCKQKLGGVCEYMGIEFPLIAISYFRVVDENNKGRTFKKWKDVNFDIEDYSLEQFQEI
VDERK
NT seq
3258 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatacagagaacaatagcgacacggaagatgatgaagacttagacaatcctgat
tacaagaactgggtcagagccgccaagggcctagagtatctacaacagggacttgctcct
tttgtttctaccgaaatcactgaaaacgtcacaactttttttgagagactgcgtctcgca
tcgggacaagttaattgcaatcaatgcaataaagcaaatttatttgccgaccaccctggc
ggaatatgtattagcagatataagaacaaatgttactgtaacatacaaataaacaataga
aggctatgtccaaatggagtttgcagtaagctgtatcactttattgtccaggaacataga
agtaacgatccactctggcggaattcagacattgcaaaatggtgctccgatgtatggttt
gtagcaaaatgcttcatgacatgttgtagtaccggcaattcagcacagtctacggacgct
gcaggactccttagtattgttgttaatgcaaaattcttccaaccgaggttaacatgtagg
atagatcctgggaaagatgatttttctaaggctcggaatgcaagaaacgaaatacttcac
aaagcagaaataaagttgtctgaacaagaattatttcactacatcgacctgtttgtagca
gtgttacacgatcctaaaacacttcttaaagataagaatgcacaagatgctgttaaaaag
ttattgaaattgaaggacaatcaaattcatataagcatgggggagaagaagaaaattcta
ctggatacggaagaggcattgatagccttgaaaacaatcggagaagaaaaagctataggg
aatattagcaccacaaaagatgtatccattcaatgcattaaagacaaaaaagtagaagtt
ctagatgaccttgaaaaagtcaaagcagatgttatttctggcagtgaaatagaacagaaa
attattaaaacagttgaagatgtagcagtgatagatgaaagattgaaacatgtagaagaa
tatctagaaaacatcaataaccaggaaattgatcgttgtatttcgagaagtcatagcaaa
gatgaaagtcaagacacaggagctgcaagtgagcattattacggaagcaccaaaataaag
acagatgaagatacaattgtaaatgttgaggatactgatgtttcattgagagattatcat
aaagaacttgctcaagaagggttgaagggagcaaatgtggtaataatggcgcctacaaac
tctggaaagacacgagtggcgtgtaaaataacgcaggaacatttacgaagaaagagagac
ggaaaagttatatttttagtggagaacgaaactctagcctatcaacaaggaaaggtgttc
agtaaactccttcccgcttataggacaaaggtgatcagtggaaccgttcaaagagataaa
aagatgtttcttaaagacttcatacacataagggacatactagttgtaacagcacaaatc
ttgttaaattcattaaagaccaaagaaattgacagcctagaaaaattttctcttattgtg
tttgacgaatgtcaccatgccaaaggtttccatcgatataatgaaataatgggacattat
attgatatgaaatttcaaaatgtttcaccacttccacaggttgttggtctaaccgcatcg
ctaggcataggcggaaattcagatcataaagctgccatggatcacatggaaaaacttctt
acaaatttggacgctgcatttctatgtactgttagacaaaacaaagaagaacttcaaaaa
atagaaaacaaagcaaaagagcatattgtggttactgaaggaagagtcgacgatttatac
aagaaagcgatacttgaaaacatgcatgctattgatgactacatgataaatcaccaaagt
ttatcggaggttcccccagcgtcagaactgaagaataaatgtcgagtcccatcaacggcg
ggcgatgcgtctttccaaaattggctcagtgatttcaaaaaggcgctttgtgatgtcgat
tcaaaacgtgttcgtagaatgatgtttccatgctttgagcatttagagatatataataaa
tccttgatggttcatgctgatgctagaataaaagatgcgagagcagttcttgtggaattt
atggagaaacaatataaggcggacgaaacttgcgaaaacgaaactgataaaatgcttctt
gaactatacgaatgtttgaaagccaaatcattcgacaatgaaccagaaaatcctaaactg
ttgaagctgggagaacttatcatcaatattcttggaaatgacaaacgtgcaaaagggata
gtattcgtggaaagtagggatcttgcaaaagctattagcaactggatgaatgagaccgac
aatctgaagcaattttatgccaagaaatgtgttggacaggcggtgtcagttgataaaggg
ggtatgacacgagcaaagcagaggaatgtgttggaatactttagaggtggacgtcataaa
ctcattattgccacatctatagtagaagagggcattgacatcacaatgtgtaacctggtc
atccggtatgagcatgtgacaaatgagattgttcgattacagtctcgaggacgagccaga
gctgcaaatagcaagtattatgtattaaccgaagctagatcttggattgtaggaaaagag
cagaagatcgaaatgcttgaagatctgattaatcaaattgtaccacagttacaggctaaa
attgaatcggatccacttgcttggcaacaacgtctgactgaaagacaaaaatacatgaaa
caacttgaagaggaaagaaatgagagagatcgcagagcaaaaatggcgcaaggtgtcaaa
gaattgaaatgcttaaaatgcttaaagtttatttgtctatcttctgacatccgtagaatc
aaagacactcagcatgttgtcatcgatgaagatgtgcaaaaacgtatcacctggacaaga
aagccaattcctaaattcaagaatgacgaccttaaatttgatggcactaccttatgtgga
aacagcacctgtaaacaaaagctaggaggggtgtgcgaatatatgggcattgagttccct
ttgattgcaataagttattttcgtgtcgttgatgaaaacaataaaggtagaacatttaaa
aagtggaaagatgtaaatttcgatattgaagattacagtttagaacaattccaagaaatt
gttgatgagagaaagtga
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integrated database retrieval system
