Rapeseed phyllody phytoplasma: RP166_5520
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Entry
RP166_5520 CDS
T10382
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+))
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rphy Rapeseed phyllody phytoplasma
Pathway
rphy03030
DNA replication
rphy03410
Base excision repair
rphy03420
Nucleotide excision repair
rphy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rphy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RP166_5520 (ligA)
03410 Base excision repair
RP166_5520 (ligA)
03420 Nucleotide excision repair
RP166_5520 (ligA)
03430 Mismatch repair
RP166_5520 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rphy03032
]
RP166_5520 (ligA)
03400 DNA repair and recombination proteins [BR:
rphy03400
]
RP166_5520 (ligA)
Enzymes [BR:
rphy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RP166_5520 (ligA)
DNA replication proteins [BR:
rphy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RP166_5520 (ligA)
DNA repair and recombination proteins [BR:
rphy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RP166_5520 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RP166_5520 (ligA)
MMR (mismatch excision repair)
DNA ligase
RP166_5520 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RP166_5520 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
PTCB-BRCT
DNA_ligase_ZBD
Nlig-Ia
BRCT_2
Zn_ribbon_6
Motif
Other DBs
NCBI-ProteinID:
QKX95530
UniProt:
A0A859I9I9
LinkDB
All DBs
Position
512888..514903
Genome browser
AA seq
671 aa
AA seq
DB search
MQNFDLIKQKIKSLVKQLTKANYQYYNLSNPDLSDQQYDALLKELINLETRYPQFKLPYS
PTLKIGGFVEKKFSTIKHKTPMMSLGNVFNLEEIKAFYDRIVKKIPTFSLLTELKIDGVA
ISLKYQKGILVQALTRGNGIWGEDITKNAQTIKTIPLRLKEDLDLEVRGEIYLSHPAFEK
LNAQRKQENKPLFSNPRNAASGTLRQLNSAIVAQRNLSIFVYGISDPYLTKPTQKETLVF
LTALGFTTNPHYYCVSNFENLLSVIEKYKTIKEQLTYDTDGIVIKINELAFHSLIGATAK
APRWATAYKFATITSQSIVQNIIFQVGRTGVITPVCKIMPVMVDGSLVSKVVLHNYDYIC
KKDIRIKDHVIVHKAGSVIPEILEVIKSKRTDLQKPTLMIEKCPACQTILEKQPGEVDYF
CLNPNCREQKIQKLIHFVSKNAMDINVLGEQTIIAFFDKNLIAKPSDLYLLKKHKHILQE
MPGFGAKKITKILDAIEASKQKGFEDVLFALGIKHIGKKVSQVLAKHFQTIENLQQATPE
LITQIREIGIKIAQSIQQYFSNSCNLEEVSKLKTLGVSFQSTNPQNPTTQTIFTNKKIVL
TGTLQKYSRLQIQQILEQMGAIITNSLSLQNNYLIVGINAGSKLTKAQKLQIPIIEEKEL
QQIIENSQIKL
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaattttgatctaattaaacaaaaaattaaatccttggtaaaacaactcaccaaa
gccaattaccaatactataatctaagcaatcccgatctaagcgaccaacaatacgatgct
ttactcaaagaactaatcaatttagaaacccgctatccccagttcaaacttccttatagc
cccactttaaaaattggtggttttgtagaaaaaaaatttagcaccattaagcacaaaact
ccaatgatgtctttgggaaatgtttttaatcttgaagaaatcaaagctttttatgaccgt
attgtcaaaaaaattcctactttttctttgttaactgaattaaaaattgacggcgtagcg
ataagtttaaaatatcaaaaaggcattttagtgcaagctttaacaagaggaaacggcatt
tggggagaagacattaccaaaaatgcccagaccattaaaaccattcctttaagattaaaa
gaagatctcgatttagaagttaggggagaaatttatttatcccatcccgcttttgaaaaa
ctcaacgcccaaagaaaacaagaaaacaaaccccttttttccaatcccagaaatgctgct
tcaggaactttaagacaacttaattcagcaattgtggctcaaagaaatttgtctattttt
gtctatggcatttcagatccttatttgactaaacctacccaaaaagagactttggttttt
ttaactgctttaggatttaccacaaatccccattattattgcgtctctaattttgaaaat
ttgcttagtgtaattgaaaaatacaaaaccattaaggaacaacttacctacgatactgat
ggaattgtcattaaaattaacgagcttgcctttcattctttaattggtgccactgccaaa
gctcccagatgggcaactgcttacaaatttgcaactattacaagccaaagcatagttcaa
aacatcatttttcaagtgggacgcactggtgttataactccagtttgcaaaattatgcct
gttatggtagatggaagtttggtctcaaaagtggttttacataattatgactacatttgc
aaaaaagatatcagaataaaagaccatgtcatagttcataaagcaggctcggttattcct
gaaattttagaagttatcaaaagtaaaagaactgatttgcaaaaacccactttaatgatt
gaaaaatgtcctgcttgtcaaacaattttagaaaaacaaccaggtgaagttgattatttt
tgcctcaacccaaattgtcgcgagcaaaaaatccaaaaactcattcattttgtatccaaa
aatgctatggatatcaacgttttaggagaacagaccatcattgctttttttgataaaaac
ctaattgccaaaccttctgacctttatttattaaaaaaacacaagcatattttgcaagaa
atgccaggctttggcgctaaaaaaattactaaaattttggatgctatcgaagcaagcaag
caaaaaggatttgaagatgttttatttgctttggggatcaaacatattggcaaaaaagta
tctcaagttttggcaaaacattttcaaactatcgaaaacctccaacaagccacaccagaa
ttaattactcaaataagagaaataggaatcaaaattgcccaaagcatccaacaatacttt
tccaattcttgtaatttagaagaggtttccaaactcaaaacactaggagtttcttttcaa
agcactaacccccaaaatccaactacccaaactatttttaccaacaaaaaaattgtttta
acaggaactctccaaaaatattcccgtcttcaaatccaacaaatcttagaacaaatggga
gcaattataactaacagtttatctttacaaaacaattatttaatagttggcatcaatgct
ggttctaaactaaccaaagcccaaaaactccaaattcctattatcgaagaaaaagaatta
caacaaattatagaaaatagccaaattaaattataa
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