Ralstonia pickettii 12J: Rpic_1272
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Entry
Rpic_1272 CDS
T00762
Name
(GenBank) DNA ligase, NAD-dependent
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpi
Ralstonia pickettii 12J
Pathway
rpi03030
DNA replication
rpi03410
Base excision repair
rpi03420
Nucleotide excision repair
rpi03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Rpic_1272
03410 Base excision repair
Rpic_1272
03420 Nucleotide excision repair
Rpic_1272
03430 Mismatch repair
Rpic_1272
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpi03032
]
Rpic_1272
03400 DNA repair and recombination proteins [BR:
rpi03400
]
Rpic_1272
Enzymes [BR:
rpi01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Rpic_1272
DNA replication proteins [BR:
rpi03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Rpic_1272
DNA repair and recombination proteins [BR:
rpi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Rpic_1272
NER (nucleotide excision repair)
GGR (global genome repair) factors
Rpic_1272
MMR (mismatch excision repair)
DNA ligase
Rpic_1272
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Rpic_1272
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
DUF4796_N
BRCT_2
Motif
Other DBs
NCBI-ProteinID:
ACD26416
UniProt:
B2UB00
LinkDB
All DBs
Position
1:1363511..1365964
Genome browser
AA seq
817 aa
AA seq
DB search
MSKTEEPASGPPSKDRPEARAAWLRAELNRYAHEYYVLDQPSVPDVEYDRLYRELEALET
EHPELKTPDSPTLRVGGAVLPEFAAVRHVIPMLSIRTETDTTANGARAFDASVRRELGLD
DTDPPVEYAAELKFDGLAINLRYERGYLVQAATRGDGTTGEDVTQNIRTIRQIPLGLSPV
DGHVPDVLEVRGEVYMRRDDFEKLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPL
SFFAYGLGEVAGWKGMPGTHSSMLDVLQAFGFPVSNERAAVAGGEGLVRFHEAIRAKRDS
LPFDIDGVVYKVNSLALQRELGFRSREPRWAVAHKYPAQEALTTVESIDVQVGRTGAITP
VARLVPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVSVVLDRRPLDD
VPGSDLFNPQQQPKYPPFELPKTCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFA
GRRMMDIEGLGERYIDNLVELDYVHGIADLYKLTLEDFLEMKRRADERDGVTPETVSAGK
IATKWAENLLEGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAMIRRAPAPLLL
ALPDVGATVAEAIADFFAEPKNQQALDALLEAGVAPQGEHAPNAKLREKLEPAELYATLG
VPKLTATRAKQLAVAAPTLAQLASVEPDQLAGLPADVTASLLEWLASHDHRAQLAKLDAL
RGELLAAMPAEAAEEGVLDGKTVVLTGTLPNLTRDEAKAMLEAAGAKVSGSVSKKTDYVV
AGEDAGSKLAKAEELNVKVLDEAGMLALLKKPAGDQA
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagactgaagaacccgcgtccggaccgccctcaaaagaccggcccgaggcgcgg
gcagcctggctgcgcgccgagctgaaccgctacgcccacgagtactacgtgctcgaccag
cccagtgtgcccgacgttgaatacgaccggctctatcgcgagctggaagcgctggaaacc
gaacaccccgagctgaagacacccgattcgcccacgctgcgggtcggtggcgctgtcctg
cccgaatttgcggcggtcaggcatgtcatcccgatgctgtcgatccgcaccgagaccgac
accaccgcaaacggcgcgcgcgcgttcgacgccagcgtaaggcgcgagctgggccttgat
gacaccgatccgcccgtggaatacgccgccgagctgaagttcgatggcctggcgatcaac
ctgcgttacgagcgtggttatctcgtgcaggcggccacgcgcggcgacggcaccaccggc
gaagacgtcacgcagaacatccgcacgatccgccagattccgctggggctgtcgccagtt
gatggccacgtgcccgacgtgctggaagtgcgcggcgaggtctacatgcgccgcgacgac
ttcgagaagctcaacgcccgccagcgagagcgcggtgacaagaccttcgtcaacccgcgc
aataccgcagccggtgccgtccgccagctcgatcctaagatggctgccgagcgcccgctg
tcgttcttcgcctatgggctgggcgaagtggccggctggaagggcatgcccggcacgcat
tccagcatgctcgacgtgctgcaggcgttcggtttcccggtcagtaatgaacgcgcggct
gtggcgggcggtgaaggcctggtcagattccatgaggccatccgggccaagcgcgacagc
ttgccgttcgacatcgacggcgtcgtctacaaggtcaactcgctcgcgttgcagcgtgaa
ctcggctttcgctcacgtgagccgcgctgggcggttgcgcacaaatatccggcgcaggaa
gcgctgaccacggtcgaatctattgacgtgcaagtcggccgaacgggcgccatcacgccg
gtggcgcggctggtgccggtgtttgttggcggggtaacggtcaccaatgcgacgctgcac
aacgaagacgaagtgcgccgcaaagatgtacgcgtgggcgacaccgtgatcgtgcggcgc
gcgggcgacgtgattcccgaggtggtgagtgtggtgcttgatcgccgcccactggatgac
gtcccgggcagcgacttgttcaatccgcagcagcagcccaagtacccgccattcgaactg
ccgaagacgtgcccggtttgcggctcgcacgtcgtgcgcgaagagggtgaggcggtggcc
cgttgctccggcggcctgttctgctcggcgcagcgcaaggaggcgatccgccactttgcc
ggtcgccgcatgatggacatcgaaggcctgggcgagcgttacatcgacaacctggtcgag
ttggactacgtgcacggcattgccgacctgtacaagctcacgctcgaagattttctggag
atgaagcgccgtgcggacgaacgtgatggcgtgacgcccgagacggtttccgcaggcaag
atcgccaccaagtgggccgagaatctgctggagggcatccaggccagcaagacgccgccg
ctggcgcgcttcctgtttgcgctgggcattcgccacgtgggcgagtcgaccgccaagacg
cttgccgactggctcggcagcctggccatgatccggcgtgcgcctgcgccgctgctgctg
gcgctgcccgatgtgggtgccacggtggctgaagccatcgccgatttctttgccgagccg
aagaaccagcaggcgctcgatgcgctgctcgaagccggtgttgcaccgcaaggcgagcat
gcgcccaacgcgaagctgcgcgagaagctggagccggccgaactgtacgccacgctgggc
gtgcccaagctgaccgccacgcgcgcaaagcaattggccgtggcagcgccaacgcttgcc
cagttggccagcgttgagcccgatcagttggctggcctgcctgcggatgtgactgcatcg
ctgcttgaatggctcgcctcgcacgaccatcgcgcgcaactggcgaagctcgacgcgctg
cgcggcgagttgctcgctgccatgcctgctgaggccgccgaagaaggcgtgctggacggc
aagacggtcgttttgaccggcacattgccgaacctcacgcgtgacgaagccaaggccatg
ctggaagcggcaggcgccaaggtatcgggttcggtgtcgaaaaagaccgactacgttgtc
gccggagaagatgccggcagcaagctcgccaaagccgaagaattgaacgtgaaggttctg
gacgaagcgggtatgctcgcgctgttaaaaaaaccggcgggagaccaggcatga
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