Raoultella planticola: B1209_06710
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Entry
B1209_06710 CDS
T05298
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpln
Raoultella planticola
Pathway
rpln03030
DNA replication
rpln03410
Base excision repair
rpln03420
Nucleotide excision repair
rpln03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpln00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
B1209_06710 (ligA)
03410 Base excision repair
B1209_06710 (ligA)
03420 Nucleotide excision repair
B1209_06710 (ligA)
03430 Mismatch repair
B1209_06710 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpln03032
]
B1209_06710 (ligA)
03400 DNA repair and recombination proteins [BR:
rpln03400
]
B1209_06710 (ligA)
Enzymes [BR:
rpln01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
B1209_06710 (ligA)
DNA replication proteins [BR:
rpln03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
B1209_06710 (ligA)
DNA repair and recombination proteins [BR:
rpln03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
B1209_06710 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
B1209_06710 (ligA)
MMR (mismatch excision repair)
DNA ligase
B1209_06710 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
B1209_06710 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
Nlig-Ia
DNA_ligase_ZBD
HHH
PTCB-BRCT
DUF2229
Prok-E2_C
ZnuA
Motif
Other DBs
NCBI-ProteinID:
AUV52567
UniProt:
A0AAN5KY50
LinkDB
All DBs
Position
1377639..1379654
Genome browser
AA seq
671 aa
AA seq
DB search
MEPIEQKLTELRTTLRHHEYLYHVMDTPEIPDAEYDRLMRELRELEALHPELITPDSPTQ
RVGAAPLASFSQVRHEVPMLSLDNVFDEESFLAFNKRVQDRLKSSDDLIYCCELKLDGLA
VSILYENGVLVQAATRGDGTTGEDITANVRTIRAIPLRLRGDNIPARLEVRGEVFLPQAG
FEKINEEARRTGGKVFANPRNAAAGSLRQLDPRITAKRPLTFFCYGVGALNGGELPGSHS
GRLQQFKAWGLPVSDRVKLCHTPEEVLTYYRKVEEDRPNLGFDIDGVVIKVDSLALQEQL
GFVARAPRWAVAFKFPAQEQMTFVRDVEFQVGRTGAITPVARLEPVHVAGVLVSNATLHN
ADEIERLGLRIGDKVVIRRAGDVIPQVVNVVLSERPEETREIVFPTHCPVCNSDVERVEG
EAVTRCTGGLICGAQRKEALKHFVSRRALDVEGMGDKIIDQLVEKEYVHTPADLFRLTAG
KLTGLDRMGPKSAQNVVNALEKSKATTFARFLYALGIREVGEATAAGLAAYFATLEALEQ
ASIEELQKVPDVGIVVATHVFHFFAEENNRDVIAQLRAEGVNWPAPVVVNAEEIDSPFAG
KTVVLTGSLSQLSRDDAKARLMALGAKVAGSVSKKTDLVIAGEAAGSKLAKAQELGIAVI
DEAEMLRLLGE
NT seq
2016 nt
NT seq
+upstream
nt +downstream
nt
atggaaccgatcgaacaaaaactaactgaactgcgaaccacgcttcgccatcatgaatat
ctgtaccacgttatggataccccggagattcccgatgcggaatatgaccggttaatgcgc
gaactgcgcgagcttgaagccctgcatccggaactgattacccctgactctccaacccaa
cgcgtgggcgcggcgccgctggcatcatttagccaggtccgccatgaagttccgatgctg
tcgctggataacgtctttgatgaagagagcttccttgccttcaataagcgcgttcaggat
cggctgaagagcagtgatgacctgatctattgctgtgagctaaagctggacgggctggcg
gtcagcattctgtatgaaaacggcgtgctggttcaggcggcaacccgtggcgatggcacc
accggcgaagatatcaccgccaacgtcaggacgattcgcgccatcccactgagactgcgt
ggcgacaatattccagcacggctggaggttcgcggcgaggtcttcttaccgcaggccggc
ttcgaaaaaattaacgaagaggcccgccgcaccggagggaaagtgtttgctaacccacgc
aacgcggcggcaggctctctgcgtcaacttgatccgcgaattacggcgaagcgaccactt
actttcttttgctacggcgtgggagcgctgaatggcggtgagctgccggggagtcattcc
ggccgtctgcagcagtttaaggcgtgggggctgccggttagcgaccgggtgaaactttgc
cataccccagaggaagtgcttacttactaccgtaaagttgaagaagaccgtccgaattta
ggttttgatattgatggcgtggtcatcaaagtcgattccctggcgcttcaggaacagctt
ggatttgtggcccgcgcgccgcgctgggcggtggcgtttaagttcccggcgcaggagcaa
atgactttcgtgcgcgacgtcgagtttcaggtggggcgtaccggagctatcaccccggtg
gctcgcctggagccggtgcatgtggccggtgttctggtgagtaatgctactttgcacaac
gccgatgaaatagagcgcctggggctgcgaattggcgataaggtggtgattcgccgcgcg
ggggacgtgattcctcaggtcgttaacgtcgtactctccgagcgtccggaggagacgcga
gagatagtcttcccgacccattgtccggtgtgcaattctgatgtcgaacgggtcgaaggc
gaggcggtaacgcgctgtaccggcgggttaatttgcggcgcacagcgtaaggaagcgtta
aagcattttgtctcccgccgcgcgttagatgtggagggcatgggggacaaaattatcgac
cagctggttgagaaagagtacgttcacacaccggcggatctcttccgcttaaccgccggg
aagctcactggcctggatcgaatggggcctaagtcagcacaaaacgtggttaatgccctg
gaaaaatcaaaagcaaccacctttgctcgtttcctctacgcattaggtattcgcgaggtc
ggtgaagcaacggccgccgggctggcggcctatttcgccacgcttgaagcgctggagcag
gcttccattgaggagctgcaaaaagttccggatgtggggattgtcgtggccacgcacgtc
tttcacttctttgctgaagagaacaaccgcgatgtgatcgcgcagctccgcgccgaaggg
gtcaactggcctgcgccggtggtggtcaatgccgaggagattgatagtccgtttgccggt
aaaacggttgtcctgaccggcagcctcagccagctttctcgcgatgatgcgaaggcgcgg
ctgatggcgctgggggcaaaagtcgccggcagcgtctcgaagaaaacggatctggtgatt
gccggcgaagcggcgggctctaagctcgctaaagcgcaggagctgggcattgccgttatt
gatgaagccgaaatgctgcggctgctgggagaataa
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