Pararhodospirillum photometricum: RSPPHO_02302
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Entry
RSPPHO_02302 CDS
T01851
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpm
Pararhodospirillum photometricum
Pathway
rpm03030
DNA replication
rpm03410
Base excision repair
rpm03420
Nucleotide excision repair
rpm03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSPPHO_02302 (ligA)
03410 Base excision repair
RSPPHO_02302 (ligA)
03420 Nucleotide excision repair
RSPPHO_02302 (ligA)
03430 Mismatch repair
RSPPHO_02302 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpm03032
]
RSPPHO_02302 (ligA)
03400 DNA repair and recombination proteins [BR:
rpm03400
]
RSPPHO_02302 (ligA)
Enzymes [BR:
rpm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSPPHO_02302 (ligA)
DNA replication proteins [BR:
rpm03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSPPHO_02302 (ligA)
DNA repair and recombination proteins [BR:
rpm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSPPHO_02302 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSPPHO_02302 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSPPHO_02302 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSPPHO_02302 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
DZR_2
VapB
PTCB-BRCT
RUBY_RBDX
Bep_C_terminal
DUF4796_N
Motif
Other DBs
NCBI-ProteinID:
CCG08928
UniProt:
H6SLR3
LinkDB
All DBs
Position
2736144..2738306
Genome browser
AA seq
720 aa
AA seq
DB search
MAGPPRTSPFFRKNQAEVWRSAMADVALMTAEEADAEMVRLVQALAHHDRLYYEKNAPEI
SDGEYDVLRQRLLDLEVRFPGLKRLDSPSDRVSGTVADGFASVRHVVPMLSLANAFSDDE
VREFDARIRRFLGLGDDDTVAYVAEPKIDGLSFSARYENGRYVRGATRGDGTTGEDITAN
LATLADLPQTLRGDHLPSVLEIRGEVFMRKGDFRALNERQAAAGAKIFANPRNAAAGSLR
QLNPAITAERPLSLYAYAAGEAEGLDTGLLTQNAFLEQLRVWGFPVHPLACLCPDVPALL
AATAALAHQRADLDHDIDGVVFKVDRLDWQQRLGTVSRAPRWGIARKFPAEEVETRINKI
VIQVGRTGTLTPVAELEPVTVGGVVVSRATLHNEDEIRRKDIREGDRVLVRRAGDVIPQV
VASLAHERPADLAPFVFPETCPVCGAHAVRPEGEVARRCTGGLTCPAQAVERLKHFVSRN
ALDIEGLGERSLEEFYQEGLVRAPADLFTLEERDRAPTNLKRLQAREGWGPKSVANLFDA
LNQRRAGVPLERFIFALGIPQVGQATARLLAQHYTTLERWRAAMIEAADETGPAHAGLIG
IEGVGPALARDLVAFFAEPHNTEALDALLATGLVVTPAAAPVQSGALAGKTIVFTGTLAT
LTRAEAKAKALALGAKVTSTVSAKTDYVVVGADAGSKETKARDLGLTLLSEEDFKALPSP
NT seq
2163 nt
NT seq
+upstream
nt +downstream
nt
gtggcggggccgccccggacctctccattcttcaggaaaaatcaagcagaggtttggagg
agcgccatggccgacgtagccttgatgacggccgaggaggccgacgctgaaatggttcgg
ctggtgcaggcgctggcccaccacgaccgtttgtactacgaaaaaaatgcgcccgagatc
agtgatggcgagtacgatgtcttacgccaacgtttacttgatcttgaggtccgctttccc
gggctcaagcgtctggacagccccagcgaccgggtgagtgggacggtcgccgacgggttt
gccagcgtgcggcacgttgtgcccatgctgtcgctggccaacgcctttagcgacgacgag
gtgcgcgagtttgatgcccgcatccggcgcttcttaggcctgggcgacgacgataccgtg
gcctacgtcgccgagcccaagatcgacggcctgtcgttctcggctcgctacgaaaacggc
cgctacgtgcgcggtgccacgcgcggcgacggcacgaccggtgaagatatcaccgccaac
ctcgccaccttggccgacctgccccaaaccctgcgcggcgatcacctccccagcgttctt
gagattcgcggcgaggtgttcatgcgcaagggcgacttccgggccctcaatgagcgccaa
gcggcggccggcgccaagatattcgccaacccccgcaacgcggcggccggctccttgcgc
cagctcaacccggccatcaccgccgagcgccccttgagcctctacgcctatgctgcgggc
gaggccgaagggctggacaccgggctcctcacccagaacgcttttctagaacaattgagg
gtttgggggttcccggttcaccccctggcttgcctgtgccccgacgtgccggccctgctg
gccgccaccgccgccctggcccaccagcgcgccgaccttgatcacgacatcgacggcgtg
gtgttcaaagtggaccggctcgattggcaacagcgcctgggcaccgtgagccgcgccccg
cgctggggcatcgcccgcaagttcccggccgaggaagtggaaacccggatcaacaagatc
gtcatccaggtcggccgcaccggcaccttgaccccggttgccgagttggagcccgtcacg
gtgggcggcgtggtggtcagccgcgccaccttgcacaacgaggacgaaatccgccgcaaa
gacatccgcgagggcgaccgggtactggtgcgccgggccggcgacgtgatcccccaggtg
gttgcctcgctggcccacgagcggccggccgatctcgcccccttcgtctttcccgagacc
tgcccggtctgcggcgcgcatgcggtgcggcccgagggcgaggtcgcccggcgctgcacc
ggcggtctcacctgcccggcccaggcggtggaacgcctcaaacacttcgtctcgcgcaac
gccttggatatcgaaggcctgggcgagcgttccttggaggagttttaccaagagggcttg
gtgcgcgccccggccgacctcttcaccctggaagaacgcgaccgcgccccgaccaatctc
aagcgcttgcaagcccgcgagggctggggccccaagtcggtggccaacctgttcgacgcc
ctcaaccagcgccgggccggggtgccgctggagcgctttatcttcgcgctgggcattcct
caggtcggccaagccaccgcccgtctcctggcccagcactacaccaccttggaacgctgg
cgcgccgccatgatcgaggccgccgacgagaccggccccgcccatgccggcctcattggc
attgaaggggtcggcccggccctggcccgcgacctcgtggcctttttcgccgagccccat
aacaccgaggccctcgacgccctgctggccaccggcctcgtcgtcaccccggccgccgcg
cccgtccaatcgggggccctggccggcaaaaccatcgtcttcaccggcaccttggcaacc
ctgacccgcgccgaggccaaggccaaggccctggcgctgggcgccaaggtcaccagcacc
gtctcagccaaaaccgactacgtcgtggtcggcgccgacgccggcagcaaagaaaccaag
gcccgcgacctgggcctcacgctcttaagcgaagaggacttcaaagccctcccctccccc
taa
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