Roseitalea porphyridii: E0E05_13210
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Entry
E0E05_13210 CDS
T05862
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpod
Roseitalea porphyridii
Pathway
rpod03030
DNA replication
rpod03410
Base excision repair
rpod03420
Nucleotide excision repair
rpod03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpod00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
E0E05_13210 (ligA)
03410 Base excision repair
E0E05_13210 (ligA)
03420 Nucleotide excision repair
E0E05_13210 (ligA)
03430 Mismatch repair
E0E05_13210 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpod03032
]
E0E05_13210 (ligA)
03400 DNA repair and recombination proteins [BR:
rpod03400
]
E0E05_13210 (ligA)
Enzymes [BR:
rpod01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
E0E05_13210 (ligA)
DNA replication proteins [BR:
rpod03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
E0E05_13210 (ligA)
DNA repair and recombination proteins [BR:
rpod03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
E0E05_13210 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
E0E05_13210 (ligA)
MMR (mismatch excision repair)
DNA ligase
E0E05_13210 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
E0E05_13210 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
QBK31482
UniProt:
A0A4P6V270
LinkDB
All DBs
Position
complement(2719350..2721482)
Genome browser
AA seq
710 aa
AA seq
DB search
MTKDASDKPVESLTEAEAAAELARLSEEIARHDVAYHGEDAPIIADADYDALKRRNLAIE
ARFAHLKRSDSPSEQVGAAVSEKFEKIAHRVPMLSLDNAFNDQDVHDFVARIRRFLKLGA
ETPLRLTAEPKIDGLSLSLRYEGGKLAYAATRGNGAVGENVTANARTIEDIPEDLAGTPP
ETFEVRGEVYLTKADFAELNRRQEEAGKPTYVNPRNTAAGSLRQLDASITAARPLKFFAY
AWGEVSDMPADTQMGMVEKLAEYGFVTNALMAVCDSAEALLEHYRRIEVERGDLDYDIDG
VVYKVDDLGLQQRLGYVSRSPRWAIAHKFPAEKAMTRLNAIDIQVGRTGALTPVARLEPV
TVGGVVVENATLHNAEEIVRLGVKIGDTVTVQRAGDVIPQILGYVPEKRPDDAEAFEFPE
TCPCPLQTPIVREATAGGTEGVVRRCSGEFACPFQRKEHLKLFVSRKAFDIDGLGDRQIE
YFYDLPEDDPLRIRAPADIFTLEERDAASELTKLKNREGYGETSAKNLFEAIEARRTIPL
ERVIFGLGIRHVGETTARALARAYGSWDAFEDAARKIAGGDEAAREDMDAIEDIGAAVVD
AVARYFGEEHNLRMVEDLIAQLTVEDAERPAAESPFAGQTIVFTGSLERMSRDEAKAMAD
RLGAKASGSVSSKTDLVVAGPGAGSKLKKAEELGVEVIDEAEWFARTEGL
NT seq
2133 nt
NT seq
+upstream
nt +downstream
nt
ttgaccaaggacgcctccgacaaacccgtcgaatccctcaccgaagcggaagctgcggcc
gaactggcgcggctctccgaggagatcgcgcggcacgacgtcgcctatcatggcgaggat
gcgccgatcatcgcggacgcggactatgacgcgctcaagcggcgcaaccttgccatcgag
gcgcggtttgcgcacctcaagcgctccgacagccccagcgagcaggtcggcgcggcggtc
tcggagaagttcgagaagatcgcccaccgcgtgccgatgctgtcgctcgacaatgcgttc
aacgaccaggacgtgcacgatttcgtcgcacgcatccggcgcttcctgaagctcggcgcg
gagacgccgctgcgcctgaccgccgagccgaagatcgacggtctgtcgctgtcgctgcgc
tacgagggcggcaagctcgcctatgcggcaacccgcggcaacggcgcggtcggcgaaaac
gtcaccgccaacgccaggaccatcgaggacattcccgaggatctcgccggcacgccgccc
gaaacattcgaggtgcgcggcgaggtctatctgacgaaggccgatttcgccgaactgaac
cgccggcaggaggaggccggcaagcccacctatgtcaatccgcgcaacacggcggcgggc
tcgctgcgccagctcgacgcgtcgatcaccgccgcgcggccgctcaagttcttcgcctat
gcctggggcgaggtcagcgacatgccggcggacacgcagatgggcatggtcgaaaaactc
gccgaatatggcttcgtcaccaatgcgctgatggccgtgtgcgacagcgccgaggcgctg
ctcgagcactaccggcgcatcgaggtcgagcgcggcgatctcgactacgacatcgacggc
gtggtctacaaggtcgacgatctgggcctgcagcagcggctcggctacgtctcgcggtcg
ccgcgctgggcgatcgcccacaagttcccggccgaaaaggcgatgacgcgcctgaacgcc
atcgacatccaggtcggccgcaccggcgcgctcacccctgtggcgcggctcgagccggtg
accgtcggcggcgtggtggtcgagaacgcaacgcttcacaatgccgaggagatcgtccgg
ctcggcgtcaagatcggcgacacggtaaccgtgcagcgcgcaggcgacgtcatcccgcag
atcctgggctacgtgcccgaaaagcggccggacgacgccgaggcgttcgagtttcccgag
acgtgcccgtgtccgcttcagacgccgatcgtgcgcgaggcgaccgccggcggcaccgag
ggcgtggtgcggcgctgctcgggcgaattcgcctgcccgttccagcgcaaggaacatctg
aagctgttcgtctcgcgcaaggcgttcgacatcgatgggctcggcgacagacagatcgaa
tatttctacgatctgcccgaagacgacccgctgcgcatccgcgcgccggccgacatcttc
acgctcgaagagcgggatgccgcgtccgaactgaccaagctgaagaaccgtgagggctat
ggcgagacctcggcgaagaacctgttcgaagcgatcgaggcgcggcggacgatcccgctc
gaacgggtgatcttcgggctcggcatccgccatgtcggcgagacgacggcgcgggcgctg
gcgcgggcctatggctcgtgggatgcgttcgaggacgcggcacggaagatcgccgggggc
gatgaggccgcacgcgaggacatggacgcgatcgaggatatcggcgcggcggtcgtcgat
gcggtcgcgcgctatttcggcgaggaacacaaccttcggatggtcgaggatctgatcgcc
cagctcaccgtcgaggacgccgagcggcctgccgccgaaagcccgttcgccggccagacc
atcgtcttcaccggctcgctggaacggatgagccgggacgaagccaaggcgatggcagac
cggctcggcgcgaaggcctcgggctcggtctcctcgaagaccgatctggtggtcgccgga
ccgggcgccggctccaagctgaagaaggcggaggagctgggcgtcgaggtgatcgacgag
gccgaatggttcgcccgcaccgaggggctttga
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