Rhodophyticola porphyridii: ABWH90_05655
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Entry
ABWH90_05655 CDS
T11241
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpoh Rhodophyticola porphyridii
Pathway
rpoh03030
DNA replication
rpoh03410
Base excision repair
rpoh03420
Nucleotide excision repair
rpoh03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpoh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ABWH90_05655 (ligA)
03410 Base excision repair
ABWH90_05655 (ligA)
03420 Nucleotide excision repair
ABWH90_05655 (ligA)
03430 Mismatch repair
ABWH90_05655 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpoh03032
]
ABWH90_05655 (ligA)
03400 DNA repair and recombination proteins [BR:
rpoh03400
]
ABWH90_05655 (ligA)
Enzymes [BR:
rpoh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ABWH90_05655 (ligA)
DNA replication proteins [BR:
rpoh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ABWH90_05655 (ligA)
DNA repair and recombination proteins [BR:
rpoh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ABWH90_05655 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ABWH90_05655 (ligA)
MMR (mismatch excision repair)
DNA ligase
ABWH90_05655 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ABWH90_05655 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XHC07715
LinkDB
All DBs
Position
1112809..1115091
Genome browser
AA seq
760 aa
AA seq
DB search
MSDLSTGPDSVKGVSRSEAEARLAELAARLAAANTAYHQNDAPEISDAEYDALKRENAAL
EAAFPELKRADSPTDQVGAAPSEGFSKIAHAERMLSLGNAFDAEDVGEFVSFIRRYLGLD
DTAPLAFTAEPKIDGLSLSLRYEDGALVQAATRGDGAVGENVTANARTIADIPETLPDAP
QLLEVRGEVYMSHEDFAALNARQTEAGEKSFANPRNAAAGSLRQLDPAITRARPLRFFAY
AWGQVSEPLAETQTGAIARLKALGFQTNDLTRRCDSTEELLAHYAAIEQARATLGYDIDG
VVYKLDDLELQRRLGVRSTTPRWAIAHKFPAELAWTRLEKIEIQVGRTGALSPVARLTPV
TVGGVVVSNATLHNEDYIAGRDARGKPIRDGKDIREGDWVQVYRAGDVIPKVADVDLSKR
PDGAVPYDFPMLCPKCGSDAVREEGDAVRRCTGGLICPAQAVEKLKHFVSRAAFDIEGLG
AKQVEQFHQDGWIAEPADIFELEARFGSGLQQLRNREGWGETSAGNLFAAIRDKRRIPLA
RLIFSLGIRHVGEVAAADLARHYVSWEAFLAAVDAAGPAADCQRAAEEAVLAERRQAEAE
GRRANLAATRSAVWDGLDPAAWEAWDDLVGIDGIGPTVAVSLVTTFHQARERASITRLVA
HLEIADMEIRDAAASPVAGKTVVFTGTLEKMTRAEAKARAEALGAKVAGSVSAKTDLLVA
GPGAGSKARKAADLGIETIDEDGWLALIGEGGGRAARGDA
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgagtgacctctcgacagggccggacagtgtaaagggcgtttccagatccgaggcggag
gcgcggctggcggagctggcggcgcgtctcgcggcggccaacacggcctatcaccagaac
gacgcccccgagatcagcgacgcggaatatgatgcgctgaaacgggaaaacgctgctttg
gaagcggcctttcccgagttgaaacgcgccgacagccccaccgatcaggtcggcgcggcc
ccgtccgaggggttctccaagatcgcccatgccgagcggatgctgtcgctcggcaatgcg
ttcgatgcggaagatgtgggcgagttcgtgagcttcatccgccgctatctgggccttgac
gacaccgcgccgctcgcctttaccgcggagcctaagatcgacggtctgtccctgtcgctg
cgttacgaggacggcgcgctggtgcaggccgccacccggggcgatggcgccgtgggcgag
aacgtcaccgccaatgcccgcaccattgccgatatccccgaaaccctgcccgacgcgccg
cagcttctggaggtgcgcggggaggtctatatgagccacgaggatttcgccgcgctgaat
gcgcgccagacggaggcgggcgagaagagtttcgccaatccgcgcaacgcggcggcggga
tccttgcgccaactggacccggcgatcacccgggcccggccgctgcgctttttcgcctat
gcctgggggcaggtctccgagccgcttgccgagacgcagacgggggcgatagcgcggctg
aaggcgctgggcttccagaccaatgacctgacccgccgctgcgacagcactgaggaattg
ctggcccattacgcggcgatcgaacaggcgcgcgcgacgcttggctatgacatagacggg
gtcgtctacaagctggacgatctggagttgcagcgccgccttggggtccgatcgaccacg
ccgcgatgggcgattgcgcataaattccccgcggaacttgcatggacccggctggaaaag
atcgagatccaggtcggtcgcaccggcgcgctgtcgccggttgcccgcctgacgccggtg
acggtcggcggtgtggtcgtgtccaacgcgacgcttcacaacgaggattacatcgccggg
cgcgatgcgcgcggcaagccgatccgcgacggaaaggacatccgcgagggggattgggtt
caggtctaccgcgccggcgacgtcatcccgaaagtggccgatgtggatctgtcgaaacgg
cccgacggcgcggtgccttatgacttcccgatgctgtgcccgaaatgcggctcggacgcg
gtccgcgaggaaggcgatgcggtgcgtcgctgcaccggggggttgatctgtccggcgcag
gccgttgaaaagctgaagcatttcgtgtcccgcgcggccttcgatatcgaagggctgggc
gcgaagcaggtggagcagttccatcaggatggctggatcgcggaacctgcggatatcttc
gagcttgaggcgcggttcggaagcggcctgcaacagctcaggaaccgcgagggctggggc
gagacatcggccggcaatctgttcgcggcgatccgcgacaagcgccgtatcccgctggcg
cggctgatcttttcgcttggcattcgccatgtgggcgaggtcgcggccgccgatctggcg
cggcattacgtgagctgggaggcgttcctggccgccgtcgatgccgccgggcccgccgcc
gattgccagcgcgcggccgaagaggcggttctggcggaacgccggcaggccgaagcggag
ggccgccgcgctaatctggccgccacccgcagcgccgtgtgggacgggctggacccggcg
gcgtgggaggcgtgggacgatctggtgggcatcgacgggatcggcccgaccgtcgccgtg
tcgctggtcaccacctttcatcaggcgcgggagcgggcctcgatcacacggctggtcgcg
catctggagatcgcggatatggagatccgggatgccgccgccagcccggttgcgggcaag
accgtcgtcttcaccgggacgctggaaaagatgacccgggccgaggccaaggcgcgggcg
gaggccttgggcgcgaaggtcgcaggctcggtctctgccaagacggatctgcttgtggcg
ggtccgggagcgggatcgaaagccaggaaggccgccgatctgggcatagagacgatcgac
gaggatggctggctggcgctgatcggcgagggcgggggccgggcggcgcgcggcgatgcc
tga
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