Rickettsia prowazekii Madrid E: RP720
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Entry
RP720 CDS
T00018
Symbol
RP720
Name
(GenBank) DNA LIGASE (lig)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpr
Rickettsia prowazekii Madrid E
Pathway
rpr03030
DNA replication
rpr03410
Base excision repair
rpr03420
Nucleotide excision repair
rpr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RP720 (RP720)
03410 Base excision repair
RP720 (RP720)
03420 Nucleotide excision repair
RP720 (RP720)
03430 Mismatch repair
RP720 (RP720)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpr03032
]
RP720 (RP720)
03400 DNA repair and recombination proteins [BR:
rpr03400
]
RP720 (RP720)
Enzymes [BR:
rpr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RP720 (RP720)
DNA replication proteins [BR:
rpr03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RP720 (RP720)
DNA repair and recombination proteins [BR:
rpr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RP720 (RP720)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RP720 (RP720)
MMR (mismatch excision repair)
DNA ligase
RP720 (RP720)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RP720 (RP720)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
CAA15151
UniProt:
Q9ZCK9
LinkDB
All DBs
Position
complement(906651..908720)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHL
VLSNSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPIFC
EPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPHKIDNAPEFLEVRGEI
YIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEQNL
ASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVVVSR
ATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL
RYVSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIEGLGRKQVAFLIDKRLISNPLDIF
FLKEKNETNLIRLENMDGWGKKSVANLFKNIEKSQKISLQRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLSKNDSDIYQKLNDLEGIGDKILVDIVDFFYVKENTQLIKRLGSV
LNIEDYQETREQNILTGKIVVFTGSLSTISRVEAKEIAEKLGAKVTASVSLNTDLVIAGV
NGGSKLKKAKELNIKIIDEVEWLAFIKNA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatattgatttaatatctgaacaagaagcaaaaaaattattaaaagaactcgct
gataaaatagcgatgtataaccacgcttattatatagaagataatccgttagtctcagat
tcagagtatgatcagctattcaatatcaatcttaaattagagaatacatttcctcattta
gttttaagcaatagtcctagcaagaaagtaggtgctaatataacaaataaatttgctaaa
gttatacatcaagcacctatgctatctcttagtaatgcttttgatgaagatgatctaaga
gattttttagaacgtataaaaaattttttacgtattaatgagtttactcctatattttgt
gaacctaaaatagatggagtgtctttttctgctatttataagaatgggttatttataact
ggagcaacaagaggtgatggatatgttggtgaagatataacgatgaatattaaaacaatt
aaaaactttccgcataaaatagataatgctcctgagtttttagaagtacgcggagaaatt
tatattgagaaacaagattttttaaatctcaataaagaacaggaagcgcagaacagaggt
aaatttgctaatcctcgtaatgctgcagcaggctctattcgtcagcttgatgttgctatt
acagctcaaagaccgctcaaatattttatatattcaggaggggtaactgagcagaatcta
gcgtctacacaagagcaattacttacaaaattaaaagcattaagctttagcgttaacgaa
atatctaagcttgcaagttctgaagaagaaatttttgctttttatgaatatctcaaaaca
aataggcataatttaccttatgaaattgatggtgtagtatataagctcaataattttgca
atgcaaaatagaatgggatttattgcacgctctccacgctttgctattgctcataaattt
cctgctataataggacaaacaaagttactatctattacggtgcaagttggtagaacaggt
atgttaacgcctgtagcagagcttgatcctatagaaataggtggggtagttgttagtaga
gcaacactacataatttccaagatattgcacgaaaagatgtgcggattaaggattatgta
tttttgcaacgtgctggtgatgttattcctcaaatcacaggtgttgatataagcaaacgt
tccaatgatacggtaaagtttgatactcctgtattttgtccatcatgtaattctaaattg
cgttatgtgtctgaagatattattatacgctgtgataacggtcttaactgtcctgctcag
aattatgagcgtatctgtcattttgtatcaaagaatgccatggatattgaaggacttgga
cgtaaacaagtcgcatttttaatagataagagattaattagtaacccacttgatattttc
tttttaaaagagaaaaatgaaaccaacttaattagattagagaatatggatggttggggt
aagaaatcagtagcaaatctttttaaaaatatagaaaaatcacaaaaaattagtttgcaa
cggtttatatatgctctaggtattaggcatatcggtgagcaaaacgcaaaattacttgct
cgagaatttgggagctataataattttatagctcaaatggaattgcttagcaaaaacgat
tctgatatttatcaaaagctaaatgatttagaagggatcggtgataagattctagtagat
attgttgattttttttacgttaaagaaaatacacagcttatcaaaagacttggttcagta
ttaaatatcgaagattatcaagagactagagaacaaaacattttaacgggtaagatagta
gtatttaccggtagtttatcaacgatatctagagtcgaagctaaagaaatagctgaaaag
cttggtgctaaagttacagctagcgtatcattaaatactgatttagtaatagcaggtgtg
aatggaggaagtaagcttaaaaaagctaaggagcttaatattaaaattattgatgaagta
gaatggcttgcattcataaaaaatgcttag
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