Agrobacterium pusense CFBP5875: CFBP5875_08850
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Entry
CFBP5875_08850 CDS
T06598
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpus
Agrobacterium pusense CFBP5875
Pathway
rpus03030
DNA replication
rpus03410
Base excision repair
rpus03420
Nucleotide excision repair
rpus03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpus00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CFBP5875_08850 (ligA)
03410 Base excision repair
CFBP5875_08850 (ligA)
03420 Nucleotide excision repair
CFBP5875_08850 (ligA)
03430 Mismatch repair
CFBP5875_08850 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpus03032
]
CFBP5875_08850 (ligA)
03400 DNA repair and recombination proteins [BR:
rpus03400
]
CFBP5875_08850 (ligA)
Enzymes [BR:
rpus01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CFBP5875_08850 (ligA)
DNA replication proteins [BR:
rpus03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CFBP5875_08850 (ligA)
DNA repair and recombination proteins [BR:
rpus03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CFBP5875_08850 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CFBP5875_08850 (ligA)
MMR (mismatch excision repair)
DNA ligase
CFBP5875_08850 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CFBP5875_08850 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
RUBY_RBDX
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
QCL84649
LinkDB
All DBs
Position
circular:complement(1727747..1729921)
Genome browser
AA seq
724 aa
AA seq
DB search
MSKDQKPVENLTELEASSELAFLAAELARHDALYHGKDAPEISDAEYDALKRRNDAIEAN
FPALVRADSPSKKVGFAPLPTFAPIVHARPMLSLDNTFSEEDLRDFVSSVYRFLGHLPDD
SIAFTAEPKIDGLSMSIRYENRRLKTAATRGDGTTGENVTPNIRTIKEIPNELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTASGSLRQLDANVTAKRKLRFFAYAL
GEVSNGGQPTRIADTQYGIVEKFREWGFPVNPLMKRFTSAQQLLEHYNEIGVARPDLDYD
IDGVVYKVDRLDLQERLGFRSRSPRWATAHKFPAEQAFTTVENIEIQVGRTGALTPVARL
TPITVGGVVVTNATLHNADYIEGIGNSGERIRPEDHDIRIGDTVIVQRAGDVIPQVLDVL
LEKRPAGAAKYAFPEKCPVCGSHAVRERNEKTGKLDSVTRCTGGFVCRAQAVEHLKHFVS
RNAFDIEGLGTKQIDFFFESDDPALSIKTAPDIFTLKARQDASHLTKLENIDGFGKVSVR
KLFDAIDARREIDLHRLIFALGIRHVGETTAKLLARSYGTYDHFEESMKAAADPASEAWA
ELNAIDGIGEVVARAIVEFYKEPRNLDVIDRLIRELRPKDAEKPSTEGSPVAGKTVVFTG
SLEKFTRDEAKARAESLGAKVAGSVSKKTDILVAGPGAGSKLAKAAELGVQTMDEDEWLA
LIGG
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgtcgaaagaccagaaacccgttgaaaacctcaccgagcttgaagcctcttcggagctt
gcatttctggcggccgagcttgcccgccatgacgcgctttaccatggcaaggatgcgccg
gagatttccgatgcggagtatgacgcgctgaagcggcgcaacgacgccatcgaagcgaat
ttcccggcgctggtgcgggccgacagcccatcgaaaaaagtaggcttcgcgccgcttccg
acctttgcgcccatcgtgcatgcgcgaccgatgctgtcgctcgacaatacgttctcggaa
gaagatctgcgcgacttcgtcagttcggtttatcgtttcctcgggcatctgcctgatgac
tccattgctttcactgcggaaccgaagatcgacgggctttccatgtccatccgctacgaa
aaccgcaggctgaagacagcggcgacgcgcggtgacggcacgaccggcgaaaatgtcact
cccaatatcaggaccatcaaggaaattccgaacgagctgcccgccgacgcgcccgatgtg
gtggaagtgcgcggcgaggtctatatggccaaaagcgactttctggcgctcaacgcccag
atggaagcggaaggcaagcagacctacgtgaacccgcgcaatactgcctccggctccctg
cgtcagctggacgccaatgtgacggcgaaacgcaagctgcggtttttcgcctacgccctc
ggcgaggtttcgaatggcggtcagccgacgcggattgctgatacccaatatggcatcgtc
gagaagttcagggaatggggtttcccggttaatccgctgatgaagcgattcacgtccgcc
cagcaattgcttgagcattataatgaaatcggtgttgcgcggcccgatctcgattacgat
atcgacggtgtggtctacaaggtcgaccggcttgatctgcaggaacggcttggcttccgc
tcgcgcagcccgcgttgggcgaccgcacataaatttccagcagagcaagccttcacgacg
gttgaaaatatcgaaattcaggttggccgcaccggcgcgctgacacctgtcgcgcgtctt
acccccatcactgtcggcggtgtcgtcgttaccaatgccacgctgcataatgccgattat
atcgagggcatcgggaatagcggtgagcgcatccgcccggaagatcacgatatccgcatc
ggcgacactgttatcgtgcagcgggccggcgatgtcattccgcaggtgctggacgtgctt
ctggaaaagcgaccggccggcgcggcaaaatatgccttcccggaaaaatgtccggtctgc
ggcagccatgcggtgcgggagcgtaatgaaaagaccggcaagctcgattctgtcacgcgc
tgcaccggcggtttcgtctgccgggcccaggcagtggagcacctgaaacatttcgtctcg
cgcaatgccttcgatatcgaagggctgggcaccaagcagatcgatttcttcttcgaaagt
gacgatcctgcgctctcgatcaagaccgcacccgacatcttcacgctgaaggcgcggcag
gatgcttctcatctgaccaagctcgaaaatatcgacggtttcggcaaggtcagcgtcagg
aagctgttcgacgccatcgatgcccgccgcgagatcgatctgcacaggctcatcttcgcg
ctgggcatccgccatgtgggcgagactacggcgaagcttctggcgcgatcctatggcact
tacgaccatttcgaagaaagcatgaaggcggcggcggatcccgcaagcgaggcgtgggcc
gagcttaatgccatcgacggcatcggcgaggtggtggcccgcgccattgtcgagttctac
aaggagccacgcaatctcgacgtcatcgatcggctgataagggaacttcgtccgaaagac
gcggaaaagccttcaacggaaggcagcccggtggcaggcaagacggtggtgtttaccggc
tcgctggagaagtttacccgcgacgaggcgaaggcccgggcggaaagtctgggcgccaag
gttgccggttccgtttcgaaaaagaccgatattctggtggcggggccgggagcgggctcc
aagcttgccaaggcggcggaactgggcgtgcagaccatggatgaggacgagtggctggcc
ctgatcggcggctga
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