Rickettsia prowazekii Chernikova: M9W_03500
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Entry
M9W_03500 CDS
T01789
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpw
Rickettsia prowazekii Chernikova
Pathway
rpw03030
DNA replication
rpw03410
Base excision repair
rpw03420
Nucleotide excision repair
rpw03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M9W_03500 (ligA)
03410 Base excision repair
M9W_03500 (ligA)
03420 Nucleotide excision repair
M9W_03500 (ligA)
03430 Mismatch repair
M9W_03500 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpw03032
]
M9W_03500 (ligA)
03400 DNA repair and recombination proteins [BR:
rpw03400
]
M9W_03500 (ligA)
Enzymes [BR:
rpw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
M9W_03500 (ligA)
DNA replication proteins [BR:
rpw03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
M9W_03500 (ligA)
DNA repair and recombination proteins [BR:
rpw03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
M9W_03500 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
M9W_03500 (ligA)
MMR (mismatch excision repair)
DNA ligase
M9W_03500 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
M9W_03500 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
AFE49520
LinkDB
All DBs
Position
complement(904916..906985)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEQEAKKLLKELADKIAMYNHAYYIEDNPLVSDSEYDQLFNINLKLENTFPHL
VLSNSPSKKVGANITNKFAKVIHQAPMLSLSNAFDEDDLRDFLERIKNFLRINEFTPIFC
EPKIDGVSFSAIYKNGLFITGATRGDGYVGEDITMNIKTIKNFPHKIDNAPEFLEVRGEI
YIEKQDFLNLNKEQEAQNRGKFANPRNAAAGSIRQLDVAITAQRPLKYFIYSGGVTEQNL
ASTQEQLLTKLKALSFSVNEISKLASSEEEIFAFYEYLKTNRHNLPYEIDGVVYKLNNFA
MQNRMGFIARSPRFAIAHKFPAIIGQTKLLSITVQVGRTGMLTPVAELDPIEIGGVVVSR
ATLHNFQDIARKDVRIKDYVFLQRAGDVIPQITGVDISKRSNDTVKFDTPVFCPSCNSKL
RYVSEDIIIRCDNGLNCPAQNYERICHFVSKNAMDIEGLGRKQVAFLIDKRLISNPLDIF
FLKEKNETNLIRLENMDGWGKKSVANLFKNIEKSQKISLQRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLSKNDSDIYQKLNDLEGIGDKILVDIVDFFYVKENTQLIKRLGSV
LNIEDYQETREQNILTGKIVVFTGSLSTISRVEAKEIAEKLGAKVTASVSLNTDLVIAGV
NGGSKLKKAKELNIKIIDEVEWLAFIKNA
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcagaatattgatttaatatctgaacaagaagcaaaaaaattattaaaagaactcgct
gataaaatagcgatgtataaccacgcttattatatagaagataatccgttagtctcagat
tcagagtatgatcagctattcaatatcaatcttaaattagagaatacatttcctcattta
gttttaagcaatagtcctagcaagaaagtaggtgctaatataacaaataaatttgctaaa
gttatacatcaagcacctatgctatctcttagtaatgcttttgatgaagatgatctaaga
gattttttagaacgtataaaaaattttttacgtattaatgagtttactcctatattttgt
gaacctaaaatagatggagtgtctttttctgctatttataagaatgggttatttataact
ggagcaacaagaggtgatggatatgttggtgaagatataacgatgaatattaaaacaatt
aaaaactttccgcataaaatagataatgctcctgagtttttagaagtacgcggagaaatt
tatattgagaaacaagattttttaaatctcaataaagaacaggaagcgcagaacagaggt
aaatttgctaatcctcgtaatgctgcagcaggctctattcgtcagcttgatgttgctatt
acagctcaaagaccgctcaaatattttatatattcaggaggggtaactgagcagaatcta
gcgtctacacaagagcaattacttacaaaattaaaagcattaagctttagcgttaacgaa
atatctaagcttgcaagttctgaagaagaaatttttgctttttatgaatatctcaaaaca
aataggcataatttaccttatgaaattgatggtgtagtatataagctcaataattttgca
atgcaaaatagaatgggatttattgcacgctctccacgctttgctattgctcataaattt
cctgctataataggacaaacaaagttactatctattacggtgcaagttggtagaacaggt
atgttaacgcctgtagcagagcttgatcctatagaaataggtggggtagttgttagtaga
gcaacactacataatttccaagatattgcacgaaaagatgtgcggattaaggattatgta
tttttgcaacgtgctggtgatgttattcctcaaatcacaggtgttgatataagcaaacgt
tccaatgatacggtaaagtttgatactcctgtattttgtccatcatgtaattctaaattg
cgttatgtgtctgaagatattattatacgctgtgataacggtcttaactgtcctgctcag
aattatgagcgtatctgtcattttgtatcaaagaatgccatggatattgaaggacttgga
cgtaaacaagtcgcatttttaatagataagagattaattagtaacccacttgatattttc
tttttaaaagagaaaaatgaaaccaacttaattagattagagaatatggatggttggggt
aagaaatcagtagcaaatctttttaaaaatatagaaaaatcacaaaaaattagtttgcaa
cggtttatatatgctctaggtattaggcatatcggtgagcaaaacgcaaaattacttgct
cgagaatttgggagctataataattttatagctcaaatggaattgcttagcaaaaacgat
tctgatatttatcaaaagctaaatgatttagaagggatcggtgataagattctagtagat
attgttgattttttttacgttaaagaaaatacacagcttatcaaaagacttggttcagta
ttaaatatcgaagattatcaagagactagagaacaaaacattttaacgggtaagatagta
gtatttaccggtagtttatcaacgatatctagagtcgaagctaaagaaatagctgaaaag
cttggtgctaaagttacagctagcgtatcattaaatactgatttagtaatagcaggtgtg
aatggaggaagtaagcttaaaaaagctaaggagcttaatattaaaattattgatgaagta
gaatggcttgcattcataaaaaatgcttag
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