Rhodococcus pyridinivorans SB3094: Y013_06840
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Entry
Y013_06840 CDS
T02974
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rpy
Rhodococcus pyridinivorans SB3094
Pathway
rpy03030
DNA replication
rpy03410
Base excision repair
rpy03420
Nucleotide excision repair
rpy03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rpy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
Y013_06840
03410 Base excision repair
Y013_06840
03420 Nucleotide excision repair
Y013_06840
03430 Mismatch repair
Y013_06840
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rpy03032
]
Y013_06840
03400 DNA repair and recombination proteins [BR:
rpy03400
]
Y013_06840
Enzymes [BR:
rpy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
Y013_06840
DNA replication proteins [BR:
rpy03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
Y013_06840
DNA repair and recombination proteins [BR:
rpy03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
Y013_06840
NER (nucleotide excision repair)
GGR (global genome repair) factors
Y013_06840
MMR (mismatch excision repair)
DNA ligase
Y013_06840
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
Y013_06840
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
DUF4796_N
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
AHD20402
UniProt:
V9XGG8
LinkDB
All DBs
Position
complement(1432125..1434233)
Genome browser
AA seq
702 aa
AA seq
DB search
MSEPTDAPITAPPEARERWQDLAEQVREHQFRYYVRDAPIISDGQFDALLGELQALEDQY
TELRTPDSPTQLVGGGFATEFGAVEHLERMLSLDNVFDEDELRAWLSRAEVETGTHPDYL
CEVKIDGVALSLVYENGKLVRAATRGDGRTGEDVTLNARTIDDVPEKLTGTAEYPIPTLL
EVRGEVFFRLEDFQTLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMYCHGYG
RMEGFEPRSQSDAYAAFAAWGLPVSPHTVRVQGAEAVVERMRYWGEHRHDIEHEIDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVERKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEYAFEMPTQCP
ECGTTLAPAKEGDVDLRCPNSRSCPAQLRERVFHVSGRGAFDIEALGYEAATALLEGKII
ADEGDLFSLTKEDLERIPFFRTTKGVLSKNGERLLQNLDKAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRAASVDELAAVEGVGPTIAAAVTDWFTVDWHVAIVDKWAAAGVR
MADERDESIPRTLEGLSIVVTGTLAGFSRDQAKEAVLARGGKAAGSVSKKTAFVVIGDNP
GSKADKAADLGVPVLDEDGFRILLDEGPDAARAYLEGREGEN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaccgacggacgcacccatcaccgctcctccggaggcgcgtgagcgctggcag
gatctcgccgaacaggtgcgcgagcatcagttccgttattacgtgcgcgacgcccccatc
atctccgacggtcagttcgacgcgctcctcggcgaactgcaggcactcgaggatcagtac
accgaactccgcacgccggattcgcccacccagctggtcggcggcggcttcgccaccgaa
ttcggtgccgtcgagcatctcgaacggatgctcagcctcgacaacgtcttcgacgaggac
gaactgcgcgcgtggctctcgcgcgccgaggtcgagaccggcactcaccccgattatctg
tgcgaggtgaagatcgacggcgtggcgctcagcctcgtctacgagaacggcaaactcgtc
cgcgcggccacccgcggcgacggacgcaccggggaggacgtcaccctcaacgcccgcacg
atcgacgacgttcccgaaaagctcaccggcaccgccgaatacccgatcccgacgttgctc
gaagtgcgcggcgaggtgttcttccggctcgaggacttccagaccctcaacgccgggctg
gtggccgaaggcaagccgcccttcgcgaatccccgcaattccgccgccggttccctgcgg
cagaagaacccggccgtcaccgcgcgccggcgtctgcgcatgtactgccacggctacggc
cgcatggagggcttcgaaccccgctcgcaatccgacgcctacgcggccttcgcggcctgg
ggcctgcccgtctcaccgcacactgttcgcgtgcagggcgccgaggcggtcgtcgagcgg
atgcgctactggggcgaacaccgccacgacatcgaacatgagatcgacggcctggtggtc
aagatcgacgacatggggctgcaccgacgcctcggtgccacgtcccgcgccccacggtgg
gcgatcgcctacaagtacccgccggaggaggtcaccaccaagctcctcgacatccgcgtc
agtgtcgggcgcaccggacgcgtgacccccttcgcctacatggagccggtcaccgtcgcc
gggtccaccgtctcgctggcgacgctgcacaacgcgtccgaggtggagcgcaaaggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgacgtgatcccggaggtcctcggc
ccggtcgtcgacctgcgcgacggttccgagtacgccttcgagatgcccacgcagtgcccc
gaatgcggtaccaccctcgccccggcgaaggagggcgacgtcgacctgcgctgccccaac
tcgcggtcgtgcccggcgcaattgcgcgagcgggtcttccacgtctcgggcaggggagcg
ttcgacatcgaagccctcggctacgaggcggccacggcgctgctcgaggggaagatcatc
gccgacgagggcgacctgttctcgctcacgaaggaagacctcgaacgcatcccgtttttc
cgcaccaccaagggcgtgctgtcgaagaacggcgaacgtctgctgcagaacctcgacaag
gcgaaggaacagccgctctggcgcgtgctggtcgccctgtccatccggcacgtcggaccg
accgctgcgcgtgcgctggccaccgagttcggcagcctcgaccggatccgggccgcgtcc
gtcgacgagctcgcggccgtcgagggcgtcggaccgacgatcgccgcggcggtgaccgac
tggttcaccgtcgattggcacgtcgcgatcgtcgacaagtgggcggcagcgggtgtgcgg
atggccgacgaacgcgacgaatcgatcccgcgaaccctcgaaggactgtcgatcgtggtt
acgggcacgctcgcgggattctcccgcgaccaggccaaggaggccgtcctcgcgcgcgga
ggcaaggccgccggatcggtgtcgaagaagacggctttcgtcgtcatcggcgacaatccg
ggttcgaaggccgacaaggccgccgatctcggagtacccgtgctcgacgaggacggtttc
cggatcctgctcgacgaggggcccgacgccgctcgcgcctatctcgaagggcgcgaaggg
gagaactga
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