KEGG   Rhodococcus qingshengii: C1M55_12420
Entry
C1M55_12420       CDS       T05315                                 
Name
(GenBank) NAD-dependent DNA ligase LigA
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rqi  Rhodococcus qingshengii
Pathway
rqi03030  DNA replication
rqi03410  Base excision repair
rqi03420  Nucleotide excision repair
rqi03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rqi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    C1M55_12420
   03410 Base excision repair
    C1M55_12420
   03420 Nucleotide excision repair
    C1M55_12420
   03430 Mismatch repair
    C1M55_12420
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rqi03032]
    C1M55_12420
   03400 DNA repair and recombination proteins [BR:rqi03400]
    C1M55_12420
Enzymes [BR:rqi01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     C1M55_12420
DNA replication proteins [BR:rqi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     C1M55_12420
DNA repair and recombination proteins [BR:rqi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     C1M55_12420
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     C1M55_12420
   MMR (mismatch excision repair)
    DNA ligase
     C1M55_12420
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      C1M55_12420
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT DNA_ligase_ZBD HHH_5 HHH PTCB-BRCT Nlig-Ia HHH_3 UPF0758_N
Other DBs
NCBI-ProteinID: AUS31832
LinkDB
Position
1:2633210..2635312
AA seq 700 aa
MTETADAMQPAPNEAREQWTELAEEVRQHQFRYYVRDAPVISDGAFDTLLGQLNALEEQY
PDLRTPDSPTQLVGGGFATDFTSVDHLERMLSLDNVFDESELRAWIAKVEQETGPELHYL
CEVKIDGVALNLVYENGKLVRAATRGDGRTGELVTLNALTINDIPERLTATDEYPIPSLL
EVRGEVFFRLEDFAALNASLVEEGKAPFANPRNSAAGSLRQKNPAVTARRRLGMICHGFG
RMEGFEPASQYDAYVALAAWGLPVSTHTSRVVGADAVVEKMKYWGEHRHDVEHEIDGLVV
KVDEMSLHRRLGTTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNGSEVKRKGVLIGDTVVLRKAGDVIPEVLGPVADVRDGTEREFVMPTHCP
ECGTLLAPAKEGDVDVRCPNQQYCPAQLRERVFHVSGRGAFDIEVLGYEAATGLLEAKVI
GDEGDLFSLDAEKLIEVPIFRTNAGSLSANGKRLLANLDSAKDKPLWRVLVALSIRHVGP
TAARALAGEFGSLQRIREASVDELAAVDGVGSTIAAAVVEWFSVDWHQQIVDKWASAGVR
MEDERDDSIPRNLEGLSIVVTGSLETYSRDQAKEAILVRGGKAAGSVSKKTAFVVVGEAP
GSKHDKAVELGVPVLDEDGFRRLLEDGPDAVAPTDLDELE
NT seq 2103 nt   +upstreamnt  +downstreamnt
gtgactgaaaccgcggatgcaatgcagccagcgcccaacgaggcgcgcgagcagtggacg
gagctggccgaagaggtacgccagcatcagttccgctactacgttcgtgatgcgcccgtc
atttcggacggtgcattcgacacattgctcgggcagctcaatgctctcgaagagcagtac
ccggatctgcgaactcccgattctccgacgcaactcgtcggtggcggattcgcgactgac
ttcacgtccgtcgaccacctcgagcggatgctcagcctcgacaacgtcttcgacgagtcg
gagctccgagcatggatcgccaaggtagagcaggaaaccgggccggaactgcactatctc
tgtgaagtgaaaatcgatggtgtcgccctcaatctcgtctacgagaacggcaaactcgtt
cgtgccgcaacccgcggtgacggtcgtacgggcgagctggtcacgctcaacgctctgacg
atcaacgacatcccggagcgccttaccgccacggacgagtacccgattccgagcctgctc
gaggtgcgtggcgaggtgttcttccgcctcgaggacttcgcagcactcaatgcctccctg
gtggaggaggggaaggcgccgttcgccaatccgcgcaactccgcggcgggctccctgcgt
cagaagaatcctgccgtcaccgcgcgtcgccgcctcggaatgatctgccacgggttcggg
cgcatggaaggtttcgagccggcctcgcagtacgacgcctacgtggccctcgccgcctgg
ggtctgccggtgtccacgcacacctcacgggtggtcggcgccgacgccgtggtcgagaag
atgaagtactggggagaacaccgccacgacgtcgagcacgagatcgacgggttggtggtc
aaggtcgacgagatgtcgttacatcgacgtctgggcaccacgtcgcgcgcaccacggtgg
gcgatcgcgtacaagtacccgccggaagaggtcacgaccaagctcctcgacatccgggtc
agtgtcggacgtacgggtcgtgtgacgccgttcgcgtacatggaacccgtcacggtggcg
ggttccactgtgtccttggccacgctgcacaacggctcggaggtcaagcgcaagggtgtg
ctgatcggcgacaccgtggtgttgcgcaaggccggagacgtcatccccgaggttctcggt
cccgtggcagacgttcgtgacggtaccgagcgcgagttcgtcatgccgacacattgtccc
gagtgcggcacgttgttggcacccgcgaaagagggcgacgtcgacgtgcgatgccccaat
cagcagtactgcccggcgcagttgcgcgagcgcgtgttccacgtctcggggcgcggtgca
ttcgacatcgaggtgctcggttacgaggccgcgaccgggctgttggaggcgaaggtcatc
ggcgacgagggcgatctcttctcactcgacgccgagaaactgatcgaagttccgatcttc
cgcaccaatgcgggatccctgtccgccaacggaaaacgcttgctggccaacctggattcg
gccaaggacaagccgctgtggagagtgcttgtggcactgtcgattcggcacgtcggcccc
actgccgcgagggcgttggccggcgaattcggctcgctgcaacgcattcgggaagcctcg
gtcgacgagttggctgcagtcgacggcgtcggatcgactatcgccgccgccgtcgtggag
tggttctccgtcgactggcaccagcagatcgtcgataagtgggcgtcggccggagtacgc
atggaggacgaacgcgacgattcgattccgcgcaatctcgagggcctctcgatcgtcgtc
accggttcgctcgagacctactcacgtgatcaggcgaaggaagcgattctggtacgcggc
ggcaaggcggctgggtcggtctcgaagaagactgcgtttgtcgtcgtcggtgaagcgccc
ggttccaagcacgacaaggcggtcgaattgggtgtgccggtgctcgacgaagacggcttt
cggcggttgctcgaagatggcccggatgcggtcgctcccaccgatttggacgaactagag
tga

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