Rhizobium rhododendri: PR018_09005
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Entry
PR018_09005 CDS
T08971
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrho
Rhizobium rhododendri
Pathway
rrho03030
DNA replication
rrho03410
Base excision repair
rrho03420
Nucleotide excision repair
rrho03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrho00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
PR018_09005 (ligA)
03410 Base excision repair
PR018_09005 (ligA)
03420 Nucleotide excision repair
PR018_09005 (ligA)
03430 Mismatch repair
PR018_09005 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrho03032
]
PR018_09005 (ligA)
03400 DNA repair and recombination proteins [BR:
rrho03400
]
PR018_09005 (ligA)
Enzymes [BR:
rrho01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
PR018_09005 (ligA)
DNA replication proteins [BR:
rrho03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
PR018_09005 (ligA)
DNA repair and recombination proteins [BR:
rrho03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
PR018_09005 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
PR018_09005 (ligA)
MMR (mismatch excision repair)
DNA ligase
PR018_09005 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
PR018_09005 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
HHH
RNA_ligase
Lar_restr_allev
Bep_C_terminal
RUBY_RBDX
Motif
Other DBs
NCBI-ProteinID:
WFS24608
LinkDB
All DBs
Position
complement(1828919..1831093)
Genome browser
AA seq
724 aa
AA seq
DB search
MPSEAMSVEDLTEADAAAELERLASQIAHHDALYHGKDAPEISDADYDALKRRNDAIEAR
FPALVRIDSPSRHVGAAPSDTFAQITHARPMLSLDNTFSQEDVQDFVAGIYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRMVSAATRGDGTTGENVTANIRTIKEIPNTLPKDAPDV
VEVRGEVYMAKSDFLALNAQMAAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLRFFAYAW
GEMSEMPADTQLGMVEAFGRWGFPINPLMKRLESVADILSHYDDIGLKRADLDYDIDGVV
YKVDDLALQARLGFRSRSPRWATAHKFPAEQAFTRLTAIDIQVGRTGALTPVARLEPITV
GGVVVTNATLHNEDYIKGIGNGGEVLREGRDIRIGDIVIVQRAGDVIPQIVDVVLEKRDA
ASVAYEFPKVCPVCGSHAVREVNEKTGKLDSVTRCTGGFACQAQAKEHLKHFVSRNAYDI
EGLGAKQIDFFFESDDPALQIRTGPDIFTLEERQKASLTKLENIDGFGKVSVGKLYAAIN
GRREIALQRFIYALGIRHVGETNAKLLARSYGTYEAFGEAMREAAPLTGDAWNDLNAIEG
IGEVVARAIVEFYKEPRNSEVIERLLREVRPQDAEQPKASGSPVAGKTVVFTGTLEKMTR
DEAKAKAESLGAKVAGSVSKKTDIVVAGPGAGSKLDKARELGVQTMDEDEWLALIGLAVD
SRVI
NT seq
2175 nt
NT seq
+upstream
nt +downstream
nt
atgccgagcgaagctatgtccgtcgaggatctgaccgaggccgatgcagccgccgaactg
gagcggctggcgagccagattgcccaccacgacgcactctatcacggcaaggatgcaccg
gagatctcggatgccgattacgacgcactgaagcggcgcaacgatgcgatcgaggcgcgc
tttccggcgctggtgcgaatcgacagtccttcccgccatgtcggcgctgctccgtccgat
acatttgcccagatcacccatgcgcggccgatgctgtcgctcgacaacacattttcgcaa
gaagacgtgcaggatttcgttgccggcatctaccgtttcctcggacgcctgccggaccag
tcgattgcctttaccgccgagccgaagatcgacgggctgtcgatgtcgatccgctacgag
aacggtcgcatggtgagtgccgcgacgcgtggcgacgggacgacgggcgaaaacgtcact
gccaatatccgaaccattaaggaaatcccgaacactctgccgaaggacgcgccggatgtc
gtcgaggtgcgcggcgaggtctacatggccaagagcgacttcctggcgctgaacgcccag
atggcggcggagggcaagcagacctacgtcaacccgcgcaacacggccgccggctcgctt
cgccagctcgacgccaaggtgacggccagccgcaagctgcgcttctttgcctatgcctgg
ggcgagatgtctgaaatgccggcggatacccagcttggcatggtggaggctttcgggcgt
tggggctttccgatcaatccgctgatgaagcggttggaatcggtagccgatattctcagc
cactatgacgatataggcttgaagcgcgccgatctcgactacgatatcgatggcgttgtc
tacaaggtcgacgacctcgcgctgcaggctagactcggcttccgctcgcgcagcccccgc
tgggcgacggcgcacaagtttccggccgagcaggcgtttacgcgactgaccgccatcgat
atccaggtgggtaggacaggcgccctgacgccagtggcgcggctggagccgatcactgtc
ggcggtgtggttgtcaccaatgcgacgctgcacaacgaggactacatcaagggtatcggc
aatggcggtgaggtcttgcgagagggccgggacatccggatcggcgatatcgtcatcgtc
cagcgcgccggcgatgtcattccgcagatcgtcgatgtggtgcttgagaagcgcgatgcc
gcaagtgtcgcctacgagtttccgaaggtctgcccggtctgcggaagtcatgcggtgcgc
gaggtcaacgagaagaccggcaagcttgattcggtgacgcgctgcaccggcggttttgcc
tgccaggcgcaggccaaggagcacctgaagcacttcgtttcgcgcaatgcctacgatatc
gaggggctgggcgccaagcagatcgatttctttttcgaaagcgacgatccggccctgcag
atccgcaccgggccggatatctttacgctggaggagcggcagaaggcgtccttgaccaag
ctcgagaatatcgatggcttcggcaaggtcagcgtcggcaagctatatgccgccatcaac
gggcggcgtgagattgccttgcagcgtttcatctatgcactcggcatccgccacgtcggc
gagaccaatgccaagctgctggcccgctcctatggcacatatgaggccttcggagaggct
atgcgcgaggcagcaccgctgacgggagatgcatggaacgacctcaatgccatcgagggt
atcggcgaggtcgtcgcccgcgccatcgtcgagttctacaaggagccgcgcaacagcgag
gtcatcgagcgactgctgcgcgaggtgcgcccgcaggatgccgagcagcccaaggcctcc
ggtagtccggtggccggcaagaccgtggtcttcacaggcacgctggaaaagatgacgcgc
gacgaggccaaggctaaagcggaaagcctcggtgccaaggtggcaggctccgtctcgaag
aagaccgacatcgtcgttgccggccccggcgccggctccaagctcgacaaggcgcgcgag
cttggagtgcagacgatggacgaagacgagtggctggcgctgatcggccttgccgtcgac
agtagggtgatttag
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integrated database retrieval system
