Rickettsia rickettsii Iowa: RrIowa_1307
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Entry
RrIowa_1307 CDS
T00643
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrj
Rickettsia rickettsii Iowa
Pathway
rrj03030
DNA replication
rrj03410
Base excision repair
rrj03420
Nucleotide excision repair
rrj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RrIowa_1307
03410 Base excision repair
RrIowa_1307
03420 Nucleotide excision repair
RrIowa_1307
03430 Mismatch repair
RrIowa_1307
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrj03032
]
RrIowa_1307
03400 DNA repair and recombination proteins [BR:
rrj03400
]
RrIowa_1307
Enzymes [BR:
rrj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RrIowa_1307
DNA replication proteins [BR:
rrj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RrIowa_1307
DNA repair and recombination proteins [BR:
rrj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RrIowa_1307
NER (nucleotide excision repair)
GGR (global genome repair) factors
RrIowa_1307
MMR (mismatch excision repair)
DNA ligase
RrIowa_1307
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RrIowa_1307
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
TLN1-like_RS
Motif
Other DBs
NCBI-ProteinID:
ABY73051
UniProt:
B0BUZ1
LinkDB
All DBs
Position
complement(1027926..1029995)
Genome browser
AA seq
689 aa
AA seq
DB search
MQNIDLISEEEAQKLLEELADKIAAYNHAYYIEDNPLVSDSEYDQLFNTNLKLEQKFPHL
ILENSPSKKVGAKIANKFAKVTHQVPMLSLSNAFDEQDVRDFVDRIKIFLRLNEFAPIFC
EPKIDGVSFSAVYKHGVLTTGATRGDGYVGEDITANIKTIKNFPHKIDNVPEFLEVRGEI
YIEKQDFLNLNKEQEEQGKDKFANPRNAAAGSLRQLDSSITAKRPLKYFVYSGGVTEQNL
ASSQDQLLTKLKECGFNINEISKLASSEEEIFAFYEYLKTNRENLPYEIDGVVYKLNDFA
LQNRMGFIARNPRFATAHKFPAIIGQTKLLSITVQVGRTGTLTPVAELEPIEIGGVTVSR
ATLHNFQEIARKDLRIKDYVFLQRAGDVIPKIMGVDFDKRPNDTETFDTPLFCLSCNSKL
HYTPEDIIIRCDNGLNCPAQNYERIRHFVSKNAMDIEGLGRKQVEFLIDKGLISNPLDIF
FLKEKNDSSLAKLENMDGWGKKSVENLFKNIEKSKNVSLPRFIYALGIRHIGEQNAKLLA
REFGSYNNFIAQMELLRTNEPDIYQKLNNLEGIGDKILVDIIDFFDVKENIELIKKLGEI
LNIEDYKETREQSSLTDKIVVFTGSLPTISRAEAKATAEKLGAKVAVGVSSNTDLVVAGV
DAGSKLKKAKELNIKIIDEEEWLTLIKNV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgcaaaatattgatttaatatctgaagaggaagcacaaaaattactagaagaactcgct
gataaaattgcagcgtataaccatgcttattatatagaagataatcctttagtttctgat
agcgagtatgatcagctatttaataccaatctcaagttagaacaaaaatttcctcattta
attttagaaaatagtcctagcaaaaaagtaggggctaaaatagcaaataaatttgctaaa
gttacgcatcaagtgcccatgctatctctcagtaatgcttttgatgagcaagatgtgaga
gattttgtagaccgcataaaaattttcttacgccttaatgagtttgctcctatcttttgt
gaacctaaaatagacggtgtgtctttttctgctgtttataaacacggggtgcttacaacg
ggagctacaagaggtgacggatatgtcggtgaagatataacagcaaatattaaaacaatc
aaaaattttcctcataaaatagataatgttccggagtttttagaagtacgaggggaaatt
tatattgaaaaacaagattttttaaatctaaataaagaacaagaagagcagggcaaggat
aaatttgccaatcctcgtaatgctgctgccggatcacttcgtcagcttgattcttctatt
acggctaaaagaccgctcaaatattttgtatattcaggaggggtaactgaacagaatctc
gcttcttcacaagatcaattacttacaaaattaaaagaatgcggctttaacattaatgaa
atatctaaacttgcgagttctgaagaagaaatttttgccttttacgaatatctcaaaaca
aatagagaaaatttaccttatgaaattgatggagtagtatataagctaaatgattttgca
ctgcaaaatagaatgggctttattgcacgaaatccacgctttgctaccgctcataaattt
cctgcaataataggacaaacaaagttactttctattactgtacaggtcggtagaactggt
acgttaacgccagtagccgaacttgaacccatagaaataggcggggtcactgttagtaga
gcaacattacataatttccaagaaattgcacgaaaagatttgcggattaaggattatgta
ttcctgcaacgtgctggtgacgttattcctaaaatcatgggagttgattttgataaacgt
cctaatgatacagaaacgtttgatactcctttattttgtctgtcatgcaattctaaattg
cattatacgcctgaagatattattatacgctgtgataatggccttaactgccctgctcag
aattatgagcgtatccgtcattttgtatcgaaaaatgctatggatattgaggggcttggg
cgtaagcaagttgagtttttaatagataagggattgattagtaatcctttagatattttc
tttttaaaagaaaaaaatgactctagcttagcaaaacttgaaaatatggatggatggggt
aaaaaatcagtagaaaatctttttaaaaatatagaaaaatcaaaaaacgttagtttgcca
agatttatatatgcattaggcataaggcatatcggtgaacaaaatgctaaattacttgct
agagaatttggcagctataataattttatagctcaaatggaattgcttagaacaaatgag
cctgatatttatcaaaaactaaacaatttagaaggaatcggtgataagattttagtagat
attattgatttttttgatgttaaagaaaatattgagcttatcaaaaaacttggtgaaata
ttaaatattgaagattataaagagactagagaacagagtagtttaacggacaagatagtc
gtatttaccggtagtttaccgacgatatctagagcagaagctaaagcaacggctgagaag
cttggggctaaagttgcagttggcgtatcatcgaacacggatttagttgtagccggcgtt
gatgcaggcagtaaacttaaaaaagctaaagagcttaatattaaaattattgatgaagaa
gaatggcttacacttataaaaaatgtttaa
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