Roseburia rectibacter: H8S51_011300
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Entry
H8S51_011300 CDS
T09206
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrk
Roseburia rectibacter
Pathway
rrk03030
DNA replication
rrk03410
Base excision repair
rrk03420
Nucleotide excision repair
rrk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
H8S51_011300 (ligA)
03410 Base excision repair
H8S51_011300 (ligA)
03420 Nucleotide excision repair
H8S51_011300 (ligA)
03430 Mismatch repair
H8S51_011300 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrk03032
]
H8S51_011300 (ligA)
03400 DNA repair and recombination proteins [BR:
rrk03400
]
H8S51_011300 (ligA)
Enzymes [BR:
rrk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
H8S51_011300 (ligA)
DNA replication proteins [BR:
rrk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
H8S51_011300 (ligA)
DNA repair and recombination proteins [BR:
rrk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
H8S51_011300 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
H8S51_011300 (ligA)
MMR (mismatch excision repair)
DNA ligase
H8S51_011300 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
H8S51_011300 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
HHH_2
BRCT
Nlig-Ia
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
RNA_ligase
BRCT_2
HHH
DNA_ligase_A_M
RUBY_RBDX
MTR4_beta-barrel
Motif
Other DBs
NCBI-ProteinID:
UMY98903
LinkDB
All DBs
Position
complement(2375456..2377480)
Genome browser
AA seq
674 aa
AA seq
DB search
MTPEEQIKELRDKINYHSDRYYNQDNPEISDYEFDMLMRQLKRLEKEHPELVTEDSPTQH
VGGTAKRTAGILVHHNVPMLSLQDVFSKEEVVDFVEQMKEQLDDPEFVVEYKIDGLSMAL
RYENGELALALTRGDGVNFGEDVTANAKVISDVKKKLKDHPEYLEIRGEVYMKNEDFDRV
NEQQELLGKKIFANPRNCAAGTLRQLDSRVTKERKLSMFVFNIQQVRGMEIATHTEGYEF
LKKQGIPIIEDYKVCKTADEVWDAITAIGENRGNLGYDIDGAVIKINRYSDRELLGNTSK
VPKWAIAYKYPPEEKETKLLDIELSVGRTGRITPTAVFEPVRLCGTSVSRATLHNQDFID
DLDVGIGDTIVVYKSGEIIPKVKEVRKEKRPDGWKRFMIPDVCPVCGAKTEREKDTADIK
CTSPNCPAQLERHIINFVGRDAMDIKGFGTVYIEELVRLGYIRDIADIFELKDHREELIE
QGIIGKEKNTDKLLDTIEKAKENDAYMLLTGFGIPNVGKAAAKTIMKRFSSITDLEEADR
ETLMEVDDVGEVSADCIFRFFHDEKNRAMINRLKSLGVNMEAEETETIDSAVSGKTVVIT
GTLPTLGRKEAAELVEKYGGKVSGSVSKKTDYVVAGESAGSKLTKAQELGITVLTEAELF
ALLGINTENGSTVR
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgacaccggaagaacagatcaaagaattaagagataagatcaattatcatagcgacaga
tattataatcaggataatcctgaaatctcagattatgaatttgacatgttgatgcggcag
ttaaaacgtctggaaaaagaacatccggagcttgtaacggaagactcgccgacacagcat
gtcggtggtacggcaaagcgtacagcaggtattttggtgcaccataatgttccgatgtta
agtcttcaggatgtattttcgaaggaggaagtcgttgattttgtggagcagatgaaagag
cagttagatgatcctgagtttgtggtggaatataagattgacggattatctatggcactc
cgctacgaaaatggcgaacttgcccttgcgctgacgcgtggtgatggggtgaactttggc
gaagatgtgacagcaaatgcaaaagtgatctcagatgttaaaaagaaactgaaagaccac
ccggaatatctggagatccgtggtgaagtctatatgaaaaatgaggactttgacagagtc
aatgaacaacaggaactgctcggtaaaaagatttttgcaaatccaagaaactgcgctgca
ggaacgctgcgccagcttgacagccgtgtgacaaaagaaagaaaactgtccatgtttgta
tttaatatccagcaggtgcgtggcatggagattgcaacgcataccgaaggatatgaattt
ttaaagaaacaggggattccgatcatcgaagattacaaagtatgtaagactgcagacgaa
gtctgggatgccatcacggcaatcggagagaatcgtggaaatcttggctatgatattgac
ggggcagtcattaagatcaaccgttattcagacagggaactgctgggaaatacctcgaaa
gtcccgaaatgggcgatcgcatacaaatatccgccggaagaaaaagaaacgaaactgctt
gatattgagctttccgttggaagaacaggaagaatcacgccgacagcggtttttgaaccg
gtgcgcctgtgtggaacttctgtttcaagagcaacattgcataatcaggattttattgat
gatcttgatgtgggaattggtgatacgatcgttgtttataagtccggagagatcattcca
aaggtcaaagaagtccgcaaggaaaaaagaccggacggctggaagcgttttatgattccg
gatgtctgtccggtctgcggtgcaaagacggaacgcgaaaaagatacagcagatatcaaa
tgtacgtcgccaaactgcccggcgcagttagaacgtcatatcattaactttgtcggcaga
gatgccatggatatcaagggatttggtacggtttatattgaagaacttgtgcgtttgggg
tatattagagatattgctgacatatttgaactgaaagatcacagagaagaactgatcgaa
cagggaattatcggaaaagaaaagaatacggacaaacttttagatacgatcgaaaaggca
aaggaaaatgatgcgtatatgcttcttaccggatttggtattccaaatgttgggaaagcg
gcagcaaagacgatcatgaaacgtttttcctcgatcacagatttagaggaagcagatcgg
gaaactctaatggaggtggatgatgtcggagaagtgagtgcagactgcattttccgtttc
ttccatgacgaaaaaaacagagcgatgatcaatcgtttaaagtcgttaggtgtaaatatg
gaagcggaagaaacagagacgatcgattcggcagtcagcggaaaaacagtagttattaca
ggtactttgccgacactgggaagaaaagaagcagcagagctggtggaaaaatacggcgga
aaagtatccggttccgtatcaaaaaagacagattatgttgttgcgggagaaagtgcgggc
agtaaactgacaaaagcacaggaacttggaataaccgtgcttacggaagcagaactgttt
gccctgcttggaattaatacagagaatgggagtacagtgcgataa
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