KEGG   PATHWAY: rro03030
Entry
rro03030                    Pathway                                
Name
DNA replication - Rhinopithecus roxellana (golden snub-nosed monkey)
Description
A complex network of interacting proteins and enzymes is required for DNA replication. Generally, DNA replication follows a multistep enzymatic pathway. At the DNA replication fork, a DNA helicase (DnaB or MCM complex) precedes the DNA synthetic machinery and unwinds the duplex parental DNA in cooperation with the SSB or RPA. On the leading strand, replication occurs continuously in a 5 to 3 direction, whereas on the lagging strand, DNA replication occurs discontinuously by synthesis and joining of short Okazaki fragments. In prokaryotes, the leading strand replication apparatus consists of a DNA polymerase (pol III core), a sliding clamp (beta), and a clamp loader (gamma delta complex). The DNA primase (DnaG) is needed to form RNA primers. Normally, during replication of the lagging-strand DNA template, an RNA primer is removed either by an RNase H or by the 5 to 3 exonuclease activity of DNA pol I, and the DNA ligase joins the Okazaki fragments. In eukaryotes, three DNA polymerases (alpha, delta, and epsilon) have been identified. DNA primase forms a permanent complex with DNA polymerase alpha. PCNA and RFC function as a clamp and a clamp loader. FEN 1 and RNase H1 remove the RNA from the Okazaki fragments and DNA ligase I joins the DNA.
Class
Genetic Information Processing; Replication and repair
Pathway map
rro03030  DNA replication
rro03030

Organism
Rhinopithecus roxellana (golden snub-nosed monkey) [GN:rro]
Gene
104654000  RPA3; replication protein A 14 kDa subunit [KO:K10740]
104654154  POLA1; DNA polymerase alpha catalytic subunit [KO:K02320] [EC:2.7.7.7]
104656947  MCM2; DNA replication licensing factor MCM2 [KO:K02540] [EC:5.6.2.3]
104657150  RPA4; replication protein A 30 kDa subunit [KO:K10741]
104657633  MCM4; DNA replication licensing factor MCM4 [KO:K02212] [EC:5.6.2.3]
104658018  RNASEH1; ribonuclease H1 [KO:K03469] [EC:3.1.26.4]
104659709  SSBP1; single-stranded DNA-binding protein, mitochondrial isoform X2 [KO:K03111]
104661089  RNASEH2A; ribonuclease H2 subunit A [KO:K10743] [EC:3.1.26.4]
104662725  RNASEH2B; ribonuclease H2 subunit B isoform X1 [KO:K10744]
104662819  POLA2; DNA polymerase alpha subunit B [KO:K02321]
104663058  MCM3; DNA replication licensing factor MCM3 isoform X1 [KO:K02541] [EC:5.6.2.3]
104664744  POLD4; DNA polymerase delta subunit 4 isoform X2 [KO:K03505]
104664812  RNASEH2C; ribonuclease H2 subunit C isoform X1 [KO:K10745]
104665114  POLD3; DNA polymerase delta subunit 3 isoform X1 [KO:K03504]
104665426  MCM6; DNA replication licensing factor MCM6 [KO:K02542] [EC:5.6.2.3]
104666230  RFC5; replication factor C subunit 5 [KO:K10756]
104667227  SPIB; transcription factor Spi-B isoform X2 [KO:K02327] [EC:2.7.7.7]
104667876  POLE3; DNA polymerase epsilon subunit 3 [KO:K02326] [EC:2.7.7.7]
104670335  RPA1; replication protein A 70 kDa DNA-binding subunit [KO:K07466]
104671141  POLD2; DNA polymerase delta subunit 2 isoform X1 [KO:K02328]
104671679  DNA2; DNA replication ATP-dependent helicase/nuclease DNA2 [KO:K10742] [EC:5.6.2.3 3.1.-.-]
104673372  LIG1; DNA ligase 1 isoform X2 [KO:K10747] [EC:6.5.1.1 6.5.1.6 6.5.1.7]
104673596  MCM7; DNA replication licensing factor MCM7 isoform X1 [KO:K02210] [EC:5.6.2.3]
104673660  PRIM1; DNA primase small subunit [KO:K02684] [EC:2.7.7.102]
104674305  POLE; DNA polymerase epsilon catalytic subunit A isoform X1 [KO:K02324] [EC:2.7.7.7]
104674579  PCNA; proliferating cell nuclear antigen [KO:K04802]
104674835  POLE4; DNA polymerase epsilon subunit 4 [KO:K03506] [EC:2.7.7.7]
104675063  RFC3; replication factor C subunit 3 isoform X1 [KO:K10756]
104675713  RPA2; LOW QUALITY PROTEIN: replication protein A 32 kDa subunit [KO:K10739]
104678972  RFC1; replication factor C subunit 1 isoform X1 [KO:K10754]
104679377  FEN1; flap endonuclease 1 [KO:K04799] [EC:3.1.-.-]
104681370  RFC2; replication factor C subunit 2 isoform X1 [KO:K10755]
104682469  MCM5; DNA replication licensing factor MCM5 [KO:K02209] [EC:5.6.2.3]
104682759  POLE2; LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2 [KO:K02325] [EC:2.7.7.7]
104682902  RFC4; replication factor C subunit 4 isoform X2 [KO:K10755]
115896938  [KO:K10740]
Reference
PMID:8087839
  Authors
Stillman B.
  Title
Smart machines at the DNA replication fork.
  Journal
Cell 78:725-8 (1994)
DOI:10.1016/S0092-8674(94)90362-X
Reference
PMID:9759502
  Authors
Waga S, Stillman B.
  Title
The DNA replication fork in eukaryotic cells.
  Journal
Annu Rev Biochem 67:721-51 (1998)
DOI:10.1146/annurev.biochem.67.1.721
KO pathway
ko03030   

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