Rhizobium rosettiformans: D4A92_19205
Help
Entry
D4A92_19205 CDS
T08393
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rros
Rhizobium rosettiformans
Pathway
rros03030
DNA replication
rros03410
Base excision repair
rros03420
Nucleotide excision repair
rros03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rros00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
D4A92_19205 (ligA)
03410 Base excision repair
D4A92_19205 (ligA)
03420 Nucleotide excision repair
D4A92_19205 (ligA)
03430 Mismatch repair
D4A92_19205 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rros03032
]
D4A92_19205 (ligA)
03400 DNA repair and recombination proteins [BR:
rros03400
]
D4A92_19205 (ligA)
Enzymes [BR:
rros01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
D4A92_19205 (ligA)
DNA replication proteins [BR:
rros03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
D4A92_19205 (ligA)
DNA repair and recombination proteins [BR:
rros03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
D4A92_19205 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
D4A92_19205 (ligA)
MMR (mismatch excision repair)
DNA ligase
D4A92_19205 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
D4A92_19205 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
HHH
Lar_restr_allev
RNA_ligase
DZR_2
Motif
Other DBs
NCBI-ProteinID:
QRF53421
LinkDB
All DBs
Position
complement(3919632..3921788)
Genome browser
AA seq
718 aa
AA seq
DB search
MAVETIPVETLTEDQAKAELQRLATEIAHHDALYHGKDKPEISDADYDALKLRNDAIEAQ
FPELVRTDSPSQRVGAAPAGIFAQVVHARPMLSLDNTFSDEDVQDFVSSVYRFLGQLPDD
SIAFTAEPKIDGLSMSLRYENRRLVTAATRGDGTTGENVTANIRTIKEIPTELPADAPDV
VEVRGEVYMAKSDFLALNAQMEAEGKQTYVNPRNTASGSLRQLDPKVTANRKLRFFAYAW
GEMSQMPAETQWEMVQVFGRWGFPINPLTQRLTSVSAILDHYHEIGLQRPDLDYDIDGVV
YKVDRLDLQARLGFRSRSPRWATAHKFPAEQAFTTVEAIDIQVGRTGALTPVARLTPITV
GGVVVTNATLHNEDYIRGIGNSGDRIRPDDHDIRIGDTVIVQRAGDVIPQVLDVVLEKRP
EDSAPYVFPKTCPVCGSHAVREKNEKTGKLDSVTRCTGGFVCRAQAVEHIKHFVSRNAFD
IEGLGTKQVDFFFESDDPALMIRTAPDIFTLKARQDQSLTKLENIEGFGRISVRKLFEAI
DARREIALHRLIFALGIRHVGETTAKLLARSYGSYAAFAEAMQAAAPKFGDAWSELNSIE
GIGEVVAASIVEFFKEPRNLEVVQRLLSEVTPLDAEAPVASNSPVAGKTVVFTGSLERFT
RDEAKARAEGLGAKVAGSVSKKTDYVVAGPGAGSKLDKARELGVQVMTEDEWLTLIGG
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgagaccattcctgtcgagaccttgaccgaggaccaggcgaaggccgaactg
cagcggctggcaaccgaaatcgcccatcacgacgcgctttaccacggcaaggacaagccg
gagatctcggacgcggattatgatgcgctgaagctgcgcaatgatgcgatcgaagcgcag
tttccggagctggtgcgcaccgacagtccctcccagcgcgtcggcgcggccccagccggt
atcttcgcgcaggtcgttcacgcccgcccgatgctgtcgctcgacaacaccttttcggat
gaggacgtccaggacttcgtatcctcggtctatcgcttccttggccagctgccggacgat
tccatcgccttcacggccgagcccaagatcgacggactgtcgatgtcgctgcgttacgaa
aaccgcaggctggtcacggccgcgacccgcggcgacggtacgacgggtgagaatgtcacg
gcgaacatccgcacgatcaaggaaatcccaaccgagcttccggccgatgcccctgacgtg
gtcgaggtgcgcggcgaagtctatatggcgaagtccgacttcctggcgctcaacgcgcag
atggaggctgagggcaagcagacctacgtcaatccgcgcaacacggcttccggctcgctg
cgccagctcgatccgaaggtgacggcgaaccgcaagctgcgcttttttgcctatgcctgg
ggcgagatgagccagatgccggcggaaacgcaatgggagatggtgcaggttttcggccgc
tggggcttcccgatcaacccgctcacccaacgtctgacctcggtttcggcgatcctcgac
cattaccatgagatcgggctgcagcggcctgatctcgactatgacatcgacggtgtcgtc
tacaaggtcgaccggctcgatcttcaggcacgcctcggtttccggtcccggtcgccgcgc
tgggcgacggcgcacaagttcccggccgagcaggctttcaccacggttgaagccatcgac
atccaggtcggccgcacgggggcgctgacgccggttgcgcgtctcacgccgatcaccgtc
ggcggcgtggtcgtcaccaatgcgacgctgcacaacgaggactacatcaggggcatcggc
aattccggcgaccgcatccggcctgacgaccacgatatccgcatcggtgacacggtgatc
gtccagcgcgctggcgacgtcatcccgcaggtgctcgacgtggtcctggagaagcggcca
gaggactcggcgccgtatgttttcccgaagacctgcccggtttgtggcagccatgcggtg
cgggagaagaacgaaaagacgggcaagctcgattcggttacgcgctgcaccggcggtttc
gtctgccgggcccaggccgtggaacacatcaagcattttgtgtcacgcaatgccttcgac
atcgaagggctcgggaccaagcaggtcgacttcttcttcgagagcgacgatccggcgctg
atgatccgcaccgcgcccgacatcttcacgctgaaggcgcggcaggaccaatcgctgacc
aagctcgagaatatcgaaggctttggtcgtatcagtgtgcgcaagctgttcgaggcgatc
gatgcgcggcgcgagatcgcgctccaccgtttgatctttgcgcttggcatccgccatgtc
ggcgagacgacggccaagctcctggcgcggtcctacggcagctatgcggcctttgcggaa
gccatgcaggcggcagcgccaaagttcggcgatgcgtggagcgaattgaacagcattgag
gggatcggcgaggtcgtcgcagcctcgatcgtcgaatttttcaaggagccgcgcaatctc
gaagtcgtccaacgcctgttgagcgaagtgacgccactggacgcagaggcgccggtcgca
agcaacagtcctgtggctggcaagaccgtcgtcttcaccggatcgctggagcgcttcacg
cgggacgaggccaaggcacgggccgaagggctcggggcaaaggtcgcgggctccgtatcg
aaaaagacagactatgtggtggcgggtccgggtgccggctccaagctcgacaaggcacgt
gaactcggcgtccaggtgatgaccgaagacgaatggctgacgctgatcgggggctga
DBGET
integrated database retrieval system
