Rhodococcus rhodochrous: 4535765_03189
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Entry
4535765_03189 CDS
T05521
Symbol
ligA
Name
(GenBank) NAD(+)-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrt
Rhodococcus rhodochrous
Pathway
rrt03030
DNA replication
rrt03410
Base excision repair
rrt03420
Nucleotide excision repair
rrt03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrt00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
4535765_03189 (ligA)
03410 Base excision repair
4535765_03189 (ligA)
03420 Nucleotide excision repair
4535765_03189 (ligA)
03430 Mismatch repair
4535765_03189 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrt03032
]
4535765_03189 (ligA)
03400 DNA repair and recombination proteins [BR:
rrt03400
]
4535765_03189 (ligA)
Enzymes [BR:
rrt01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
4535765_03189 (ligA)
DNA replication proteins [BR:
rrt03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
4535765_03189 (ligA)
DNA repair and recombination proteins [BR:
rrt03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
4535765_03189 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
4535765_03189 (ligA)
MMR (mismatch excision repair)
DNA ligase
4535765_03189 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
4535765_03189 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
SNV21945
LinkDB
All DBs
Position
1:complement(3427624..3429732)
Genome browser
AA seq
702 aa
AA seq
DB search
MSEPTDAPITAPPEARERWQDLAEQVREHQFRYYVRDAPIISDGEFDALLGELQVLEEQY
TELRTPDSPTQLVGGGFATEFGAVEHLERMLSLDNVFDEDELRAWLSRAEAETGTHPDYL
CEVKIDGVALSLVYENGKLVRAATRGDGRTGEDVTLNARTIDDVPEKLTGSDGYPIPTLL
EVRGEVFFRLEDFQTLNAGLVAEGKPPFANPRNSAAGSLRQKNPAVTARRRLRMYCHGYG
RMEGFEPRSQSDAYAAFAAWGLPVSPHTTRVQGADAVVERMRYWGEHRHDVEHEIDGLVV
KIDDMGLHRRLGATSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVERKGVLIGDTVVIRKAGDVIPEVLGPVVDLRDGSEYAFEMPTRCP
ECGTPLAPAKEGDVDLRCPNSRLCPAQLRERVFHVAGRGAFDIEALGYEAATALLEGKII
ADEGDLFSLTKEDLERIPFFRTTKGVLSKNGERLLQNLDKAKEQPLWRVLVALSIRHVGP
TAARALATEFGSLDRIRAASVDELAAVEGVGPTIAAAVTDWFTVDWHVAIVDKWAAAGVR
MADERDESIPRTLEGLSIVVTGTLAGFSRDQAKEAVLARGGKAAGSVSKKTAFVVIGDNP
GSKADKAADLGVPVLDEDGFRILLDEGPDAARAYLEEREGQN
NT seq
2109 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaaccgacggacgcacccatcaccgctcctccggaggcgcgtgagcgctggcag
gatctcgctgaacaggtgcgcgaacatcagttccgctactacgtgcgcgacgcccccatc
atctccgacggtgagttcgacgcgctcctgggcgaactccaggtgctcgaggagcagtac
accgaactccgcacgccggattcgcccacccagctggtcggcggcggcttcgccaccgag
ttcggtgccgtcgagcatctcgaacgcatgctcagcctcgacaacgtcttcgacgaggac
gaactacgcgcgtggctctcgcgcgccgaggccgagacgggcacccaccccgactatctg
tgcgaggtgaagatcgacggcgtggcgctgagtctcgtctacgagaacggcaaactcgtc
cgcgcggccacccgcggcgacggacgcaccggcgaggacgtcaccctcaacgcccgcacg
atcgacgacgttcccgaaaagctcaccggcagcgacggatacccgattccgaccttgctc
gaagtgcgcggcgaggtgttcttccggctcgaggacttccagaccctcaacgccgggctg
gtggccgagggcaaacctcccttcgcgaatccccgcaattccgccgccggttcgctccgc
cagaagaacccggccgtcaccgcgcgtcggcgcctgcgcatgtactgccacggctacggc
cggatggagggtttcgagccccgttcgcaatccgacgcctacgccgccttcgcggcctgg
gggctgcccgtctccccgcacaccacccgcgtgcagggcgccgacgcggtcgtcgagcgg
atgcggtactggggcgaacaccgccacgacgtcgaacacgagatcgacggcctggtggtc
aagatcgacgacatggggctgcaccgccgtctcggcgccacgtcccgcgccccgcggtgg
gcgatcgcctacaagtacccgccggaggaggtcaccaccaagctcctcgacatccgcgtc
agcgtcgggcgcaccgggcgcgtgacccccttcgcctacatggagccggtcaccgtcgcc
gggtccacggtgtcgctggcgacactgcacaatgcgtccgaagtggagcgcaagggcgtg
ctcatcggcgacaccgtggtcatccgcaaggccggcgacgtgatcccggaagtgctcggc
ccggtcgtcgacctgcgcgacggttccgagtacgcattcgagatgcctacccggtgcccc
gagtgcggaacaccgctcgccccggcgaaggagggcgacgtcgacctgcgctgccccaac
tcgcgactgtgcccggcgcagttgcgcgaacgggtcttccacgtcgcgggcaggggagcg
ttcgacatcgaagcgctcggctacgaggcggcgacggcactgctcgaggggaagatcatc
gccgacgagggcgatctgttctcgctcacgaaggaagatctcgaacgcatcccgttcttc
cgcaccaccaagggcgtgctgtcgaagaacggcgagcgcctgctgcagaacctcgacaag
gcgaaggagcaaccgctctggcgcgtgctcgtcgccctgtccatccggcacgtcggacca
accgctgcgcgggcgctggccaccgagttcggcagcctcgaccggatccgggccgcatcc
gtcgacgaactcgcggccgtcgagggcgtcggaccgacgatcgccgcggcggtgaccgac
tggttcactgtcgactggcacgtcgccatcgtcgacaagtgggcggcagcgggcgtgcgg
atggccgacgaacgcgacgaatccatcccgcggaccctcgaaggactgtcgatcgtcgtc
acgggcacactcgcaggattctcccgcgaccaggccaaggaggccgtcctcgcgcgtgga
ggcaaggctgccggatcggtgtcgaagaagacggctttcgtcgtcatcggcgacaacccg
ggttcgaaggccgacaaggcggccgatctcggggtgcccgtgctcgacgaggacggtttc
cggattctgctcgacgaggggcccgacgccgctcgggcctatctggaagagcgagaagga
cagaactga
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