Rhodococcus ruber: CS378_06035
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Entry
CS378_06035 CDS
T05142
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rrz
Rhodococcus ruber
Pathway
rrz03030
DNA replication
rrz03410
Base excision repair
rrz03420
Nucleotide excision repair
rrz03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rrz00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CS378_06035
03410 Base excision repair
CS378_06035
03420 Nucleotide excision repair
CS378_06035
03430 Mismatch repair
CS378_06035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rrz03032
]
CS378_06035
03400 DNA repair and recombination proteins [BR:
rrz03400
]
CS378_06035
Enzymes [BR:
rrz01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
CS378_06035
DNA replication proteins [BR:
rrz03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
CS378_06035
DNA repair and recombination proteins [BR:
rrz03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
CS378_06035
NER (nucleotide excision repair)
GGR (global genome repair) factors
CS378_06035
MMR (mismatch excision repair)
DNA ligase
CS378_06035
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
CS378_06035
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
Nlig-Ia
PTCB-BRCT
UPF0758_N
Motif
Other DBs
NCBI-ProteinID:
ATQ28328
UniProt:
A0A098BVY3
LinkDB
All DBs
Position
complement(1345595..1347718)
Genome browser
AA seq
707 aa
AA seq
DB search
MSESTDAPTQAPPDVRERWQQLAEEVREHQFRYYVRDAPIISDGAFDQLLGALKQLEDDY
PDLRVPDSPTQLVGGGFATDFTAVDHLERMLSLDNVFTEDELRAWVSRVEAETGPDLHYL
CEVKIDGVALSLVYEDGRLRRAATRGDGRTGEEVTLNALTIDDIPERLTATEEFPIPRVL
EVRGEVYFRLEDFHALNAALVAEGKAPFANPRNTAAGSLRQKNPAVTARRRLGMICHGLG
HVEGFEPVSLSQSYAALAAWGLPVSGHTARVVGVDEVLTRMRYWGEHRHDVEHEIDGLVV
KIDEVSLQRRLGSTSRAPRWAIAYKYPPEEVTTKLLDIRVSVGRTGRVTPFAYMEPVTVA
GSTVSLATLHNASEVARKGVLIGDTVVLRKAGDVIPEVLGPVVDLRDGTEREFVMPAECP
ECGTPLAPAKEGDVDLRCPNQRYCPAQLRERVFHVAGRGAFDIEALGYEAATALLEAGVI
ADEGDLFDLTADDLLRTSLFRTKAGALSANGARLLANLRAAKDKPLWRVLVALSIRHVGP
TAARALATEFGSLDRIREASVDELAAVEGVGPTIAAALGEWFAVDWHVAIVEKWRAAGVR
MLDERDESVERTLEGLSIVVTGSLEGFSRDQAKEAILLRGGKAAGSVSKKTAFVVVGDAP
GTKADKAAELGVPVLDEEGFRRLLELGPAGVSGGTDAIEEEFGELES
NT seq
2124 nt
NT seq
+upstream
nt +downstream
nt
gtgagtgaatcgacggacgcgcccacccaagctccgcccgacgtgcgtgagcgctggcag
caactcgcggaggaggtgcgcgagcaccagttccgttactacgtgcgcgatgcgccgatc
atctccgacggtgccttcgaccagttgctcggcgcgctgaagcagctcgaggacgactac
ccggacctgcgcgtccccgattcccccacccagctcgtcgggggcggcttcgccaccgac
ttcaccgccgtcgaccacctcgaacggatgctcagcctcgacaacgtcttcaccgaggac
gagttgcgggcctgggtctcccgcgtggaagccgagaccggcccggacctgcactacctc
tgcgaggtgaagatcgacggcgtcgcgctgagcctggtgtacgaggacggccggctgcgc
cgggccgccacccgcggcgacggccgcaccggcgaggaggtcacgctcaacgctctcacg
atcgacgacatccccgaaagactcaccgcgaccgaggaattcccgattccccgcgtgctc
gaggtgcggggcgaagtgtacttccggctcgaggacttccacgcgctcaacgccgccctc
gtcgccgagggcaaggccccgttcgccaatccgcgcaacacggcggccggatcgctgcgg
cagaagaaccctgcggtgaccgcgcgacggcgcctcgggatgatctgccacgggctcggc
cacgtcgagggattcgagccggtgtcgctgtcgcagtcctacgccgccctcgccgcctgg
gggctgcccgtctccgggcacaccgcccgtgtcgtcggcgtcgacgaggtcctcacccgg
atgcggtactggggtgaacaccgccacgacgtcgaacacgagatcgacgggctcgtggtc
aagatcgacgaggtgtccctgcagcggcggctcggcagcacctcgcgcgcgccccggtgg
gcgatcgcctacaagtacccgccggaggaggtgaccacgaagttgctcgacatccgcgtc
agcgtcggccgcaccggccgggtcaccccgttcgcctacatggaaccggtcacggtcgcc
ggatcgaccgtctccctcgccacgttgcacaacgcgtcggaggtcgcacgcaagggggtg
ctgatcggcgacaccgtggtgctccgcaaggccggtgacgtcatccccgaggtgctcgga
ccggtcgtggacctgcgtgacggcaccgaacgcgagttcgtcatgcccgccgaatgcccc
gagtgcgggacaccgctcgcccccgccaaggagggcgacgtggacctgcgctgccccaac
cagcggtactgcccggcgcagctgcgcgagcgggtcttccacgtcgcgggccgcggcgcg
ttcgacatcgaggcgctcgggtacgaggcggccaccgcgctgctcgaggccggggtcatc
gccgacgagggcgacctgttcgacctgaccgccgacgacctgctgcgcacctcgctcttc
cgcacgaaggcaggggcactgtccgccaacggcgcccgcctgctcgcgaatcttcgcgcg
gccaaggacaagccgctgtggcgggtgctggtcgcgctgtcgatccggcacgtcggcccg
accgccgcgcgggcactggccaccgagttcggcagcctcgaccggatccgggaggcgtcc
gtcgacgagctcgccgcagtggagggggtcggaccgaccatcgcagcggcgctgggcgaa
tggttcgcggtcgactggcacgtcgcgatcgtcgagaagtggcgcgcggccggggtgcgc
atgctcgacgagcgcgacgaatccgtcgaacgcacactcgagggtctgtcgatcgtcgtc
accggctcgctcgaggggttctcacgggatcaggccaaggaggcgatcctgctccgcggt
ggcaaggcggccggctcggtgtcgaagaagaccgcgttcgtcgtcgtcggggacgcgccg
ggaacgaaggccgacaaggcggccgagctgggcgtccctgtcctcgacgaggaggggttc
cgccgcctgctcgagctcggcccggccggcgtctcgggtggcacggacgcgatcgaggag
gagttcggcgagctcgagagctga
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integrated database retrieval system
