Renibacterium salmoninarum: RSal33209_2942
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Entry
RSal33209_2942 CDS
T00641
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsa
Renibacterium salmoninarum
Pathway
rsa03030
DNA replication
rsa03410
Base excision repair
rsa03420
Nucleotide excision repair
rsa03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSal33209_2942
03410 Base excision repair
RSal33209_2942
03420 Nucleotide excision repair
RSal33209_2942
03430 Mismatch repair
RSal33209_2942
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsa03032
]
RSal33209_2942
03400 DNA repair and recombination proteins [BR:
rsa03400
]
RSal33209_2942
Enzymes [BR:
rsa01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSal33209_2942
DNA replication proteins [BR:
rsa03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSal33209_2942
DNA repair and recombination proteins [BR:
rsa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSal33209_2942
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSal33209_2942
MMR (mismatch excision repair)
DNA ligase
RSal33209_2942
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSal33209_2942
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
HHH
PTCB-BRCT
Nlig-Ia
BRCT_2
KOW6_SPT51-2
HHH_3
Motif
Other DBs
NCBI-ProteinID:
ABY24664
UniProt:
A9WTZ3
LinkDB
All DBs
Position
complement(2616939..2619215)
Genome browser
AA seq
758 aa
AA seq
DB search
MPENFGAMRQDGLVSTSESDSPAPAATPAATLRAEYSKLVEDIRHYRFAYYNEAESLVSD
AEFDVLFRRLEEIEALHPELISNDSPTQEVGGEVSAAFTPVQHTSQIYSLEDVFSIEELQ
SWIIKAQANAEKLAGSIVAERPLRWLTELKIDGLAVNLLYRNGQLVRAATRGDGITGEDI
THNVLTIQEIPRQLRGENLPEEVEIRGEVFIASKDFLALNEQIVGTGRAPFANPRNAAAG
SLRQKDPADTAKRPLSMLVHGIGSRIGLDVASQSESYALLKAWGLPTSPYFKVLTGYQEV
LDYINHYGEHRHDLLHEIDGIVIKIDDFASQNALGFTSRVPRWAVAYKYPPEEVHTKLLD
ILVNVGRTGRVTPFGVMEPVKVAGSTVEMATLHNQDVVKAKGVLIGDTVVLRKAGDVIPE
IVGPVLALRDGREREFVMPTECPSCGTALAPAKEGDVDIRCPNAKSCPDQLRERVFHLAG
RGAFDIEALGWEAAIALTQPAEPELAPVRNEAQIFNLVAEDLALVKIKREKKVKGVLSGV
HELVPYFYSKGTEEKPSEPTSNTVKLFIELEKAKAQPLWRVLVALSIRHVGPTASRALAT
AFGSMAAIRAASEPELAEVDGVGPTIAAALIEWFAEDWHREIIDAWAADGVRMADERDES
VRRTLAGLTIVVTGSLEKFNRDQAKEAIINRGGKSAGSVSKNTDYVVAGENAGTKLDKAE
KLGVTVLDEAGFETLLAHGPDHSAEAEENESEGSTTND
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
gtgccagaaaatttcggtgcaatgcggcaagatggtcttgtgagcacatcagaatcggat
tctcccgcacccgcagccacccctgccgccaccctgcgggcagagtacagcaaactcgtt
gaagacattcggcactatcgatttgcctattacaacgaggcagagtcgctggtgtcagac
gccgaattcgatgtgctctttcgtcgacttgaagagatcgaagcgctgcatccggagcta
atcagtaatgattcaccaactcaagaagttggtggagaggtttcggccgcgtttacgccg
gttcagcacaccagccagatttatagcctcgaagatgttttctcgatcgaagagctgcaa
agctggatcatcaaagcccaggccaacgcagagaagctagcgggcagcattgtggcggaa
cgcccgttacgttggctgaccgaactcaaaattgatgggctcgcggtgaacttgctctac
cgcaatggccaacttgtccgcgcggccactaggggcgacggcatcactggcgaagacatt
acacataatgttttgacgatccaagagattccgcggcaattacggggcgaaaatctgcct
gaggaagtagaaattcgcggcgaagttttcatcgcttcaaaagacttcttggcgctcaat
gaacagattgttggcacgggccgggctccctttgcgaatccgcgaaatgctgcggctgga
tcgttacggcagaaagatcccgcagacacggcaaaacgaccgctcagtatgttggtgcac
ggcatcggttcgcggatcggtctagatgttgctagccagtctgaaagctacgcattgctc
aaagcttgggggctgcccaccagcccgtatttcaaagtattgactggctaccaagaagtc
ttggattacatcaatcattacggcgagcatcggcatgatctgctgcatgagattgatggc
attgtcatcaaaattgacgatttcgctagccaaaatgccttgggcttcacttcccgagtt
ccgcgatgggcggtcgcttataagtacccacctgaagaagtgcataccaagctgttagac
attctggtcaacgtcggccggaccggcagggtgacaccctttggggttatggagcccgtc
aaagtagccggatccaccgtggagatggccacgctgcacaaccaggacgtggttaaggcc
aagggcgttctgatcggggacaccgtggtgctgcgcaaagctggtgacgtcatcccggag
attgttgggccggtccttgccctgcgcgacggtagggaacgtgaattcgtgatgccaaca
gaatgtccgtcctgtggcactgccttggcgccggccaaagagggcgatgttgatattcgc
tgtcctaatgcaaagtcgtgcccggaccaattacgcgagagggtgttccacctggccggt
cgcggtgcgttcgatatcgaggcgctgggttgggaggcggcgattgcacttacccaaccg
gctgaaccagagctagcgccagttcgcaatgaggcgcaaattttcaacttggtcgcagaa
gacttagctctggtcaagattaagcgtgaaaaaaaggtgaagggcgtgctcagcggtgtg
catgagctggtgccctatttctactcaaagggtaccgaggaaaaaccttctgaaccgacg
tctaataccgtgaaactttttatcgaattggagaaggccaaggcacaaccactttggcga
gtgctggtggcgctttccatccggcacgttgggcccacagcatcgcgggcattagccacc
gcctttggctcaatggcagcaattcgcgccgcttccgaaccggaattggctgaggtcgac
ggcgtgggccccacgattgccgcagcccttattgaatggtttgccgaagattggcatcgc
gaaatcattgacgcttgggcggcggacggcgtccgaatggcagatgaacgcgacgaatcg
gtaagacgaacgttggcaggactcaccattgtggtgaccggctctttggaaaagttcaat
cgagatcaagccaaggaagcgatcatcaacaggggcggtaaatctgccggttcagtatca
aaaaatactgattacgtggtggcgggagaaaacgctggcactaagctagataaggccgaa
aagctaggtgtcacggtgcttgatgaagctgggtttgagacattgttggcgcacggtcca
gaccacagcgctgaagctgaagaaaatgaatctgaggggtctacaacaaatgactga
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integrated database retrieval system
