Candidatus Endomicrobium trichonymphae Rs-D17: TGRD_421
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Entry
TGRD_421 CDS
T00755
Name
(GenBank) DNA ligase (NAD+)
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsd
Candidatus Endomicrobium trichonymphae Rs-D17
Pathway
rsd03030
DNA replication
rsd03410
Base excision repair
rsd03420
Nucleotide excision repair
rsd03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
TGRD_421
03410 Base excision repair
TGRD_421
03420 Nucleotide excision repair
TGRD_421
03430 Mismatch repair
TGRD_421
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsd03032
]
TGRD_421
03400 DNA repair and recombination proteins [BR:
rsd03400
]
TGRD_421
Enzymes [BR:
rsd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
TGRD_421
DNA replication proteins [BR:
rsd03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
TGRD_421
DNA repair and recombination proteins [BR:
rsd03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
TGRD_421
NER (nucleotide excision repair)
GGR (global genome repair) factors
TGRD_421
MMR (mismatch excision repair)
DNA ligase
TGRD_421
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
TGRD_421
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
BRCT_2
HHH
RNA_ligase
zinc_ribbon_2
Motif
Other DBs
NCBI-ProteinID:
BAG13904
UniProt:
B1H072
LinkDB
All DBs
Position
617185..619209
Genome browser
AA seq
674 aa
AA seq
DB search
MIMGNIQNRIDYLRKELIRHNGLYYESNNPEISDSEYDNLAKELEQIEKENPLFALPDSP
TKKISGFVSSSFEQIKHSSPMLSLDNTYSQKETAKWYERIEKNLNNKNTEFTIEPKIDGV
SASLTYINGSLTAGATRGDGETGEDITENIKKVKNIPYKLKADNPPYFFELRGEVYIDKS
DFRKLNEEILMSVGQKFANSRNAASGSLRQKNPQITAERKLRFFVHSLGKIDGKQFESQS
DFLQYCRKCGFQLQDNFKICHSLKEIMDFMEIMINNRDLLHYEIDGLVIKVNSLQLQKEL
GYTNKSPRWAIAFKFPAKQATTKLSRIRVQVGRTGIITPSAILESVTLAGVTISHATLHN
FEEIERLNVNEGDTVLIERAGDVIPKIVKVVKKENRGFFKPPHNCPSCNSGIVKENEEEV
AYRCINPECPAQFRRHLIHFVSRNAMDIDGFGKAVIDQFLDRKKIQVLADIYYLKYDDFI
KLDLFKEKKTSNLMKAVAASKKHPLSKLLFALGIRRIGEKVSEIIAKKFKSMEALFNASI
EDFTRVPEIGSILALSLKEFFENKTVRNVIDNLIAAGVNMIEPEAEQSGTQFDGKMFVLT
GELKNHTREQAGKIIRSLGGKVASSVSKKTDYIVAGVNAGSKLKKAKELNVKIVDEAEFD
ILTGKLSLIENTKF
NT seq
2025 nt
NT seq
+upstream
nt +downstream
nt
atgattatgggaaatattcaaaaccgtattgattatctaagaaaagaacttattcgacac
aacggtctttattatgagagtaacaatcctgaaatatctgacagcgaatatgacaacctt
gcgaaagaacttgaacagatcgagaaagaaaatccgctttttgccttgccagattccccg
actaaaaaaatatcaggctttgtttcatcatcctttgaacaaataaaacattcctctcca
atgctttcattagacaacacttactctcaaaaagaaactgcaaaatggtatgaaagaatt
gaaaaaaatcttaacaataaaaacacggaatttactatcgagccgaaaatcgatggagta
agtgcaagtttaacttatataaatggtagtctgacggcgggggcaacgcgtggcgacgga
gaaaccggcgaagatataacggaaaatataaaaaaagtaaaaaatattccttataaactt
aaagcagacaatcctccttatttctttgaactgcgcggcgaagtctacattgataaatct
gattttaggaaattaaatgaggaaatacttatgtccgtaggacaaaagtttgctaattcc
agaaatgcggcatcgggttctttaagacaaaaaaatccgcagattacggcagaaagaaaa
ctccgctttttcgtacattcgcttgggaaaatcgacggaaaacaatttgaaagtcagtcg
gattttttgcagtactgccgaaaatgcggatttcagcttcaagataattttaaaatatgt
cattctctgaaagaaataatggattttatggagatcatgatcaataatagggatctgctg
cattatgaaattgacggacttgtaattaaagtgaacagtctgcagcttcaaaaagaactg
ggatatacaaataaaagccctagatgggctatagcatttaagttccctgcaaaacaagca
acgacaaagttaagcagaattcgcgtacaggtaggtcgcaccggaataataacgccgtcg
gcaattttagagtctgttacgcttgcaggcgttactatatcgcatgctacgttgcataat
tttgaagaaattgagcgtcttaacgtaaatgagggtgataccgttttaatagagcgcgcg
ggcgacgttatccctaagatagtgaaagttgtaaaaaaagaaaatagaggtttttttaag
cctccgcataactgcccgtcatgtaacagcgggattgtcaaagaaaatgaggaagaagtt
gcatacagatgtatcaatcctgaatgtccggcgcagtttagaagacatttaatacatttt
gtaagcagaaatgctatggatattgatggatttggcaaagctgtaatagatcagtttctt
gacagaaaaaaaatacaagtccttgccgacatatattatttaaaatacgatgattttatt
aagcttgatttatttaaagaaaagaaaaccagcaatttgatgaaagcggttgcagcaagt
aaaaaacatcctctaagcaaactgttatttgctttaggaatacggcgtatcggggaaaaa
gtttccgagattatcgcaaaaaaatttaaaagtatggaggctctgtttaatgcaagcatt
gaagattttacaagagttcctgaaatcggcagtatcttggcactatctttgaaggaattt
tttgaaaataaaaccgtgcgcaatgtaatagataatttgattgcagcaggtgtaaatatg
attgaacctgaagcggaacaatccggtacgcagtttgacggcaaaatgtttgttttaacc
ggagagcttaaaaaccacacaagagaacaggcaggcaagattataagatcactcggcggg
aaagttgcttcttcagtaagtaagaaaacggattatattgttgctggcgtaaacgcaggt
tcaaaacttaaaaaagcaaaagaattaaatgtaaaaattgttgacgaagcggaatttgat
atattaacaggaaaattgtcattgatagaaaatacgaaattctga
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