Ralstonia pseudosolanacearum FQY_4: F504_1443
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Entry
F504_1443 CDS
T02751
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rse
Ralstonia pseudosolanacearum FQY_4
Pathway
rse03030
DNA replication
rse03410
Base excision repair
rse03420
Nucleotide excision repair
rse03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rse00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
F504_1443
03410 Base excision repair
F504_1443
03420 Nucleotide excision repair
F504_1443
03430 Mismatch repair
F504_1443
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rse03032
]
F504_1443
03400 DNA repair and recombination proteins [BR:
rse03400
]
F504_1443
Enzymes [BR:
rse01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
F504_1443
DNA replication proteins [BR:
rse03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
F504_1443
DNA repair and recombination proteins [BR:
rse03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
F504_1443
NER (nucleotide excision repair)
GGR (global genome repair) factors
F504_1443
MMR (mismatch excision repair)
DNA ligase
F504_1443
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
F504_1443
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
AGH83959
LinkDB
All DBs
Position
1507798..1510239
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTEHPASGASPEARAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPE
LRTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDP
PVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAV
PDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEAAGWSGMPETHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFD
IDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDMPGS
DLFNPAQQPKHPPFELPRSCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK
WAENLLDGIRASKTPPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPLLLTLPD
VGATVAEAIADFFAEPKNQQALDALLTAGVAPQGEHPPSAKLRDQLEPAELYAALGVPKL
TAIRSKQLATLVPSLAQLANVDTAQLEGLPADVSASLLAWLDADDHRARLGTLDALRAEL
LAAMPAGAAEEGALSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKTDYVVAGVE
AGSKLARAQELGVRVLDEAGMLALLQNPPGDSA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaccgaacatcccgcgtccggcgcgtcgcccgaggcgcgggcagccgcgctg
cgcgcgacgctgaaccgctacgcccacgagtactacgtgctggaccagcccagcgtgccg
gacgccgaatacgatcggctctaccgcgagctggaagccctggaagccgaacacccagaa
ctgcggacgccggattcgcccacgctgcgggtcggcggcgccgtgctgccggagttcgcg
ccggtgcggcacgtggtgccgatgctctcgatccgcaccgagaccgacaccaccgccggc
ggcgcgctggacttcgatgccagcgtgcgccgcgaactggggctggccgaatccgatccg
cccgtcgaatacgcggcggagctcaagttcgatggcctggcgatcaacctgcgctacgag
aaaggcttcctggtccaggccgccacgcgcggcgacggggccaccggcgaagacgttacg
cagaacatccgcaccatccgccagatccccctcggcctgcggcccgtcggcggcgccgtg
cccgacgtgctcgaagtgcgcggcgaggtctacatgcggcgcgacgatttcgagcgcctc
aatgcccgccagcgcgagcgcggcgacaagaccttcgtcaacccgcgcaacaccgctgcc
ggcgcggtgcgccagctcgatccgaagatggccgccgagcgcccgctgtcgttcttcgcc
tatggcctgggcgaggcggccggctggagcgggatgcccgagacccattccggcatgctc
gatgcactggtcgcctacggtttcccggtcagcaaggaacgtgcggcagtgaagggcggg
gaagggctggtgcaattccacgccgccatcggcgccaagcgcgacagcctgccgttcgat
atcgatggcgtggtctacaaggtcaactcgctggcactgcagcgcgagctgggctttcgc
acgcgcgagccgcgctgggcggtggcgcacaagtacccggcgcaggaggcgctgaccacg
gtcgagtcgatcggcgtgcaggtcggccgcaccggggccatcacgccggtggcgcgtctg
gtgccggtgttcgtcggcggcgtgacggtcaccaacgcgaccctgcacaacgaagacgaa
gtccgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atccccgaggtggtggccgtggtgctggagcgccgcccgatggaagacatgccgggcagc
gacctgttcaaccccgcgcagcagcccaagcatccgccgttcgaactgcccaggagctgc
ccggtctgcggctcgcacgtggtgcgcgaagagggcgaggcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggcgatccgccatttcgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctggaatacgtg
cacggcatcgccgacctgtaccggctcacgctcgacgatttcctcgaaatgaagcgccgc
gccgacgagcgcgacggcgtgaccccggagaccgtggccgccggcaagattgccaccaag
tgggccgagaacctgctggacggcatccgggccagcaagaccccgccgctggcgcgcttc
ctgttcgcgatgggcatccgccatgtcggcgaatcgacggccaagacgctggccgactgg
ctgggcagcctggcgatagtccgccgcgcgccggcgccgctgctgctgaccttgcccgac
gtgggggcgaccgtcgccgaggccatcgccgatttctttgccgagccgaagaaccagcag
gcgctcgacgccctgctcaccgccggcgtggcgccccagggcgagcacccgcccagcgcg
aagctgcgcgaccaactggagcccgccgaactgtacgccgcgctcggcgtgcccaagctg
acggccatccgcagcaagcagctggcgacgctggtgccgtcgctcgcgcaactggccaac
gtcgacaccgcgcagctggaaggcctgccggcggacgtgtcggcgtcgctgctggcctgg
ctggacgccgacgaccatcgcgcccggctggggacgctggacgcgctgcgcgccgaactg
cttgccgccatgccggccggggccgccgaggaaggcgcgctgagcggcaagaccgtggtg
ctgaccggcacgctgcccaccctgagccgcgacgaggccaaggccatgctggaggcggcc
ggcgccaaggtgtctggctcggtgtcgaagaagaccgactacgttgtggctggcgttgag
gcgggcagcaagctcgcccgcgcgcaggagctgggcgtgcgggttctggacgaagccggt
atgctcgcgctgttgcagaacccgccgggagattccgcgtga
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