KEGG   Richelia sinica: B6N60_04447
Entry
B6N60_04447       CDS       T07308                                 
Name
(GenBank) DNA ligase
  KO
K01972  DNA ligase (NAD+) [EC:6.5.1.2]
Organism
rsin  Richelia sinica
Pathway
rsin03030  DNA replication
rsin03410  Base excision repair
rsin03420  Nucleotide excision repair
rsin03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:rsin00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    B6N60_04447
   03410 Base excision repair
    B6N60_04447
   03420 Nucleotide excision repair
    B6N60_04447
   03430 Mismatch repair
    B6N60_04447
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:rsin03032]
    B6N60_04447
   03400 DNA repair and recombination proteins [BR:rsin03400]
    B6N60_04447
Enzymes [BR:rsin01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.2  DNA ligase (NAD+)
     B6N60_04447
DNA replication proteins [BR:rsin03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    Other elongation factors
     B6N60_04447
DNA repair and recombination proteins [BR:rsin03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA ligase
     B6N60_04447
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     B6N60_04447
   MMR (mismatch excision repair)
    DNA ligase
     B6N60_04447
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    SHDIR (short-homology-dependent illegitimate recombination)
     RecET pathway
      B6N60_04447
SSDB
Motif
Pfam: DNA_ligase_aden DNA_ligase_OB HHH_2 BRCT HHH_5 Nlig-Ia DNA_ligase_ZBD PTCB-BRCT BRCT_2 RNA_pol_A_CTD Dna2 Zn_ribbon_NUD Auto_anti-p27
Other DBs
NCBI-ProteinID: QXE25727
UniProt: A0A975TCV8
LinkDB
Position
4767503..4769548
AA seq 681 aa
MIQISSEAKRVAEVRRLLQQASYAYYVLDAPIMEDTVYDRLYRELQELEAKYPELVTPDS
PTQRVGERPATHFTSVRHNIPLYSLENAFNLEELQGWEQRWRRHLPPQYSLGDVDYVAEL
KIDGAALALTYQNGVLVRGATRGDGVTGEDITQNVRTIRAIPLRLNFDGMENIEKVEVRG
ETFLPLDVFKEINQERQKAGEQVFANPRNAAAGTLRQLDPRIVARRRLDFFAYTLHIPGM
DDASIANTQWDALELLQKMGFRVNPNHKLCATLAEVGEYYEYWDRSRLNLPYMTDGVVVK
LNSFKLQEQLGFTQKFPRWAVALKYPAEEAPTRVERITVNVGRTGALTPLAEMLPVQLAG
TTVSRATLHNSDRIAQLDIRVGDTVIVRKAGEIIPEVVRVIKELRPADTQAFIMPTDCPV
CGQPVVRESGEAVTRCVNASCPAILKGEIEHWVSRDALDIKGMGEKLVHQLVDKELVHSV
ADLYHLTTEKLCTLERMGQKSAEKLVNAIAQSKNQPWARVLYGLGIRHVGSVNAQLLTEK
FTTVEKLSAAKQSDIEGVYGIGAEIAQSVSQWFRTPANQTLISRLQEIGLQFTQTEETLV
VGKINAQIAGKVFVITGTLPTLKRDEAKGLIQKAGGKVTDSVSKKTDYLVVGADAGSKLE
KAQSLGITQLSEEQLLDLLNT
NT seq 2046 nt   +upstreamnt  +downstreamnt
atgatccaaatttcctctgaagcgaagcgtgtagcagaagtacggcggttgttacaacaa
gctagctacgcctattatgtcttagatgcaccgattatggaggatactgtctatgaccga
ctgtatcgtgaattacaagaattagaagctaaatatccagaactggtaactcctgatagt
cctacccaaagggtaggggaaagaccagcaacccactttacttccgttcgccataatatc
cccctctatagcctggaaaacgcttttaacctggaagaattgcaaggatgggaacaacgt
tggcgacgacatttaccacctcagtattcgctgggggatgttgactatgtggcagaattg
aaaattgatggtgcggccttagctttaacttatcaaaacggggtgctggttcgtggtgcc
accaggggtgatggggtaacgggtgaagatattacccagaatgtgcggactattcgcgcc
atacctctgcgcttaaactttgatggaatggaaaatatcgaaaaggtagaagtgcgggga
gagacatttttacctttggatgtatttaaagaaattaatcaggaaagacaaaaagccggt
gaacaggtgtttgctaacccccgcaatgccgcagcgggtacactcagacaattagacccc
cgcattgtggcacgacgcaggttagatttctttgcttataccctgcatattcccggaatg
gatgatgcaagtattgctaatacccagtgggatgctttggaattgttgcaaaagatgggt
tttcgcgtcaaccctaaccataagttatgcgcgactttggcagaggtaggggaatattac
gaatattgggataggtcacggctgaatttaccctacatgaccgatggggtggtagtgaag
ctgaattcctttaagctgcaagaacagttagggtttacccaaaagtttccccgctgggct
gtagccctcaaatatccagcagaggaagcgccaactcgcgtagaaagaattacggtgaat
gtgggcaggactggggccttaacaccattggcagaaatgttacctgtgcagttggcaggg
actacagtttctcgcgctactctacataatagcgatcgcattgcccaattagatatccgc
gttggtgatacggtcattgttcgcaaagccggggaaattattcctgaagtggtgcgggta
attaaagaattgcgtccagcagatactcaagcttttattatgccaactgactgccctgtc
tgcggtcaaccagttgtcagagagtcgggggaagcagtaaccaggtgtgtgaatgcttct
tgtccagccattctcaaaggagaaattgaacattgggtcagtcgtgatgccttagatatt
aaagggatgggtgaaaagctggtgcatcaattggtagataaagagttggtgcattccgtt
gctgacttatatcatttgaccacagaaaaactatgtaccctggaacggatgggtcaaaag
tcagccgaaaaattagtgaatgcgatcgcccaatcaaaaaatcaaccttgggctagggta
ttatatggtttagggattcgtcatgtaggcagcgtcaacgcccaactattgacagagaaa
ttcactaccgtagaaaagttaagtgccgctaaacagtcagatatagaaggcgtttacggt
atcggtgcagaaattgctcaatcagtctctcaatggttccgcacccctgccaatcaaacc
ttgatttcccgtctccaagaaattggcttgcaatttactcaaacagaagaaacactagta
gttggtaaaattaacgcccaaattgcaggtaaagtttttgtcattactggcacgttacct
accttaaaacgtgatgaggctaaagggttaattcaaaaagctggtggtaaagtcacagac
tcagtgagtaaaaaaacagactatttagttgtgggggcagatgcaggttctaagttagaa
aaggcccagtctttgggaattactcagttgagtgaggaacaattattagatttgttaaac
acctaa

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