Rossellomorea sedimentorum: V1502_01915
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Entry
V1502_01915 CDS
T11221
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsj Rossellomorea sedimentorum
Pathway
rsj03030
DNA replication
rsj03410
Base excision repair
rsj03420
Nucleotide excision repair
rsj03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsj00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
V1502_01915 (ligA)
03410 Base excision repair
V1502_01915 (ligA)
03420 Nucleotide excision repair
V1502_01915 (ligA)
03430 Mismatch repair
V1502_01915 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsj03032
]
V1502_01915 (ligA)
03400 DNA repair and recombination proteins [BR:
rsj03400
]
V1502_01915 (ligA)
Enzymes [BR:
rsj01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
V1502_01915 (ligA)
DNA replication proteins [BR:
rsj03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
V1502_01915 (ligA)
DNA repair and recombination proteins [BR:
rsj03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
V1502_01915 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
V1502_01915 (ligA)
MMR (mismatch excision repair)
DNA ligase
V1502_01915 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
V1502_01915 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Other DBs
NCBI-ProteinID:
XNZ72491
LinkDB
All DBs
Position
365596..367602
Genome browser
AA seq
668 aa
AA seq
DB search
MDIKSAEQKVAELHNLLNQYNYEYHVLDKPSVPDAEYDRVMNELIAIETEFPELRTADSP
TQRVGGNTLEAFEKVQHRTQMLSLGNAFNEDDLRDFDRKVRQAAGEDYSYVCELKIDGLA
VSLRYEDGLFRQGATRGDGTIGEDITANLKTIKSIPLRIPEPLTMEVRGEAFMPKSSFEA
LNKAKEEKEEEPFANPRNAAAGSLRQLDPRIAASRNLDIYLYSIADVGETGVVSHSEGLD
LLDNLGFKTNRERKKCSNIDEVIQYVEGWVEKRPNLPYDIDGIVIKVDSLQLQQELGTTA
KSPRWAIAYKFPAEEVVTRLKDIELSVGRTGVVTPTAILEPVRVAGTTVQRASLHNEDLI
REKDIKIGDYVVVKKAGDIIPEVVNVLEERRTGDEQDFRMPENCPECGSRLVRLEGEVAL
RCINPKCPAQIREGLIHFVSRNAMNIDGLGEKVISQLFIEGLIVDVADIYRLEREQLLQL
ERMGEKSVDNLLNAIEASKSNSLERLLFGLGIRHVGAKAAKTLAQEFENIDNLSNASKDQ
LTAINEIGDKMADAVVAYFEKEEVMELILELKEAGVNTEYNGPKPVKAEEVDSYFAGKTV
VLTGKLEQLGRNEAKQKIEELGGKVTGSVSKKTDLLIAGEDAGSKLSKAQELQIEIWDEE
KLIEELNR
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
gtggatatcaaaagcgcagaacaaaaagttgctgaacttcataatcttttaaatcaatat
aattatgaatatcatgtgctggacaagccgtcggtgcccgatgccgagtatgaccgtgtc
atgaatgagctgatcgccatcgaaacagagttccctgaactgagaacagccgactcaccg
acacagagggtgggcggcaatacgcttgaagcttttgaaaaagttcagcacagaacgcag
atgctcagtcttggcaatgcttttaacgaagatgacctgagggactttgaccgtaaagtc
cgtcaggcggctggagaggactattcctacgtatgtgaactgaaaattgacgggctcgcg
gtctccctccgctatgaagacggccttttccgccagggggcgacaaggggagacggaacg
atcggtgaggatatcaccgcaaacctgaaaaccattaagtcgatcccgctccgtatccct
gaacctctcacaatggaggtaagaggcgaagcgttcatgcctaaaagctcgttcgaggcc
ctgaataaggcgaaggaagaaaaggaagaagagccgttcgcgaatccgcgtaatgcggca
gccggatctttacggcagctcgaccctcggattgccgcttcccggaacctcgatatttac
ttgtattccattgccgatgtcggcgaaacaggtgtggtctcgcatagtgaaggacttgat
cttttagataaccttggctttaaaaccaatcgagagaggaaaaagtgcagcaatatcgat
gaagtcatccaatacgtggaaggatgggtcgagaagcgtccaaatcttccgtatgacatc
gatggcatcgtcatcaaggtcgattcccttcaactgcagcaggagcttggtaccaccgcg
aagagtccgagatgggcgattgcttataaatttccggctgaagaagttgttacccgtcta
aaggacatcgaactgagtgtcggccggacgggtgttgtgacaccgaccgccattcttgag
ccggtcagagttgctgggacgactgtacagcgcgcttccctgcataatgaagacctgatc
agggaaaaggacatcaaaatcggtgattacgttgttgtcaaaaaggcaggggacatcata
ccggaagtcgtgaacgtcctggaagagcgacgtaccggtgatgagcaggatttccgcatg
ccggaaaactgtcctgagtgtggaagcagactggtgaggcttgaaggagaggttgccctc
cgctgtatcaaccctaagtgtccggcgcagatcagggaaggcttgatccacttcgtctcc
aggaatgcgatgaatattgacggtcttggcgaaaaagtgatcagccagctgtttatagaa
gggttgattgtggacgtagccgatatctaccgcctcgaaagggagcagctcttacagctg
gaaagaatgggcgagaaatcggtggataacctcctgaacgctatcgaagcatcgaagtca
aactccctagaacgcttattattcggcttggggatccgccatgtcggagctaaagcagcc
aaaacccttgcccaggaattcgagaacatcgataaccttagcaacgcatcaaaagatcag
ctgacggccattaatgaaattggcgacaagatggcagatgcggtggtcgcatactttgaa
aaagaagaagtgatggaactgatcctcgaacttaaagaggcaggggtcaacacggaatac
aatggtcctaaacctgtgaaagcggaagaggtcgattcttattttgccggcaagacggtt
gtccttactgggaaacttgaacaactcggccgaaatgaagctaagcagaaaatcgaggaa
cttggcggtaaagtgaccggatctgtcagtaagaaaacggatcttttgattgccggggaa
gatgccggttcaaaactgtccaaggcgcaggaactgcaaatagagatatgggacgaagag
aagctgattgaagaacttaaccgttaa
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