Cereibacter sphaeroides KD131: RSKD131_0934
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Entry
RSKD131_0934 CDS
T00844
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsk
Cereibacter sphaeroides KD131
Pathway
rsk03030
DNA replication
rsk03410
Base excision repair
rsk03420
Nucleotide excision repair
rsk03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSKD131_0934
03410 Base excision repair
RSKD131_0934
03420 Nucleotide excision repair
RSKD131_0934
03430 Mismatch repair
RSKD131_0934
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsk03032
]
RSKD131_0934
03400 DNA repair and recombination proteins [BR:
rsk03400
]
RSKD131_0934
Enzymes [BR:
rsk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSKD131_0934
DNA replication proteins [BR:
rsk03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSKD131_0934
DNA repair and recombination proteins [BR:
rsk03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSKD131_0934
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSKD131_0934
MMR (mismatch excision repair)
DNA ligase
RSKD131_0934
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSKD131_0934
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Phage_cap_E
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ACM00794
UniProt:
B9KRK2
LinkDB
All DBs
Position
1:937748..939862
Genome browser
AA seq
704 aa
AA seq
DB search
MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALRLRNRAIEEQF
PELRRSDSPSDRVGGALAEGFAKVRHEVRMLSLENAFDLAEVEDWIERIRRYLGHVGDLL
FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGAPDLLEVR
GEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAHS
EPLAATQHEAIARLAALGFTTNPLTRLCTGPEELLAQHAEIERQRAALGYDIDGVVYKVD
DLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDVQVGRTGALSPVARLKPVTVGGVV
VANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAAP
YRFPETCPECGSEAIREPGDSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGAKQVEA
LWRDGWIRQPADIFELPNRYREGIQRLENREGWGRKSAENLFAAIEARRRIALHRLIFAL
GIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGAVLATSLVTAFH
QEAERAAVEALAAHLTVEDAEVRAPVASPVAGRIVVFTGTLEKMSRAEAKARAEALGAKV
SGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGDA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgagaggccggtggatcaactgaccgaggcggaagccgcggccgagcttgca
cggctggcagaggcgatcgaggctgcgaataccgcctatcacacccatgacgcgccgcag
atcagcgacgcggactatgacgcgctcaggctgcgcaaccgggccatcgaggagcaattc
cccgagctgcgccggagcgacagcccgagcgaccgggtgggcggggctctggcggaagga
tttgcgaaggtccgccacgaggtgcggatgctctcgctcgagaatgcattcgaccttgcc
gaggtcgaggactggatcgagcggatccggcgttatctcggccatgtgggcgaccttctg
ttcacggccgagccgaagatcgacgggctctcgctgtcgctccgctacgagaaggggcgt
ctcgtgcaggcggcgacccgcggcgacggcgagaccggcgagaatgtgaccgagaacgcc
cgtaccatcgcggacctgcccaccgagctcgacggcgcaccggacctgctcgaggtgcgc
ggcgaggtctacatgagtcacgaggatttcgcggcgctgaatggccggcaggaggccgcg
ggccagcgcctcttcgccaacccgaggaatgcggccgcgggctcgctccgccagctcgat
ccggctgtcaccgcctcgcgcccgctgcgcttcttcgcctatgcctggggcgcccactcc
gagccgctggccgccacgcagcacgaggccatcgcccgtctggccgctctgggctttacc
acgaacccgctcacccgcctttgcacggggcccgaggagcttctggcgcaacatgccgag
atcgagcggcagcgcgcggcgctgggctatgacatcgacggtgtggtctacaaggtcgac
gatctggcgctgcagcggcggctgggctttcgggcctcgacgccgcgctgggccatcgcg
cacaagttcgcagcccagctcgcctggacccagctcgaggggatcgacgtccaggtgggc
cgcaccggcgccctgtcgccggtggcgcgcctcaagccggtgacggtgggcggggtcgtg
gtggccaatgccacgctccacaacgaggattacatcgccggccgcgattcgaaggggcag
gagatccgcggcggcaaggacatccgcgtgggcgactgggtgcaggtctaccgtgcgggc
gacgtgatccccaaggtggccgatgtcgatctcgaccgccgccccgagggggccgcgccc
taccgctttcccgagacctgtcctgaatgcggctccgaggcgatccgcgagccgggcgat
tcggtgcgccgctgcaccggcggcctgatctgcccggcccagcaggtcgagcggctgaag
catttcgtttcgcgggcggccttcgatatcgagggtctcggcgcaaagcaggtcgaggcg
ctgtggcgcgacggctggatccgccagcccgccgacatcttcgagctgccgaaccgctac
cgcgaggggatccagcggctcgagaaccgcgagggctgggggcggaagtcggccgagaat
ctcttcgcggccatcgaggcgcggcggcgcatcgcgctccaccggctgatcttcgcgctg
ggcatccgccatgtgggcgagaccacggccacgcttctggccacccactacggctcctgg
gccgctttcgaggccgcgatgacccgcgccgaagtgggcgcggggcccgagtggcaggac
cttctctccatcgacggcgtgggggcggtgcttgccacatcgctcgtcaccgccttccat
caggaggccgagcgggcagcggtcgaggcgctcgcggcccatctgacggtcgaggatgcc
gaggtgcgcgccccggtcgcgagccccgtcgcgggcaggatcgtggtcttcaccggcacg
ctcgagaagatgtcgcgcgccgaggccaaggcgcgggccgaggctctgggggcgaaagtg
tccggttcggtctcggccaggaccgatctcgtggtggcggggccgggggcgggatccaag
gccaagcaggccgcggcgctcggcatcgagacgatcgacgaggacggctggctgcgcctg
atcggggacgcatga
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integrated database retrieval system
