Ralstonia solanacearum PSI07: RPSI07_1964
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Entry
RPSI07_1964 CDS
T01273
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsl
Ralstonia solanacearum PSI07
Pathway
rsl03030
DNA replication
rsl03410
Base excision repair
rsl03420
Nucleotide excision repair
rsl03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsl00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RPSI07_1964 (ligA)
03410 Base excision repair
RPSI07_1964 (ligA)
03420 Nucleotide excision repair
RPSI07_1964 (ligA)
03430 Mismatch repair
RPSI07_1964 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsl03032
]
RPSI07_1964 (ligA)
03400 DNA repair and recombination proteins [BR:
rsl03400
]
RPSI07_1964 (ligA)
Enzymes [BR:
rsl01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RPSI07_1964 (ligA)
DNA replication proteins [BR:
rsl03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RPSI07_1964 (ligA)
DNA repair and recombination proteins [BR:
rsl03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RPSI07_1964 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RPSI07_1964 (ligA)
MMR (mismatch excision repair)
DNA ligase
RPSI07_1964 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RPSI07_1964 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH_5
HHH
DUF4796_N
DUF7340
Motif
Other DBs
NCBI-ProteinID:
CBJ51328
LinkDB
All DBs
Position
complement(2044571..2047012)
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTENPASGASPEARAASLRAALNRYAHEYYVLDQPSVPDAEYDRLYRELEALEADHPE
LKTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTADGALAFDASVRRELGLAESDP
SVEYAAELKFDGLAINLRYEKGFLVQAATRGDGTTGEDVTQNIRTIRQIPLGLRPVNGAV
PDVLEVRGEVYMRRDDFERLNARQRERGEKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEAAGWAEMPGTHAGVLDALVAFGFPVSHERAAVTGGEGLVRFHADIRAKRDSLPFD
IDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGS
DLFNPAQQPKYPPFELPKSCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK
WAENLLAGIQASKTPPLARFLFALGIRHVGESTAKTLADWLGSLAVIRRAPAPLLLTLPD
VGATVAEAIADFFAEPKNQQALDALLAAGVTPQGEHPPGAKLRDQLEPAELYAALGVPKL
TATRSKQLATLVPALAQLATADAAQLEGLPADVSASLLDWLEADDHRARLAQLEALRAEL
LAAMPAGTAEEGALSGKTVVLTGTLPNLTRDAAKAMLEAAGAKVSGSVSKKTDYLVAGVE
AGSKLARAQELGVRVLDEAGMLALLQNPPGDSA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaccgaaaaccccgcgtccggcgcatcgcccgaggcgcgggcagcctcgctg
cgcgcggcgctgaaccgctacgcccacgagtactacgtgctggaccagcccagcgtgccg
gacgccgaatacgaccggctctaccgcgagctggaagcgctggaagccgaccaccctgaa
ctgaagacgccggattcgcccacgctgcgggtcggcggtgccgtcctgccggagttcgca
ccggtgcgccacgtggtgccgatgctgtcgatccgcaccgagaccgacactacggcagac
ggtgcgctcgccttcgatgccagcgtgcgccgcgaactggggctggccgaatccgacccg
tccgtcgaatacgcggccgaactcaagttcgatggcttggcgatcaacctgcgctacgag
aagggcttcctggtccaggccgccacgcgcggcgacggcaccaccggcgaagacgtcacg
cagaacatccgcaccatccgccagatcccgctcggcttgcggcccgtcaacggtgccgtg
cccgacgtgctcgaagtgcgcggcgaggtctacatgcggcgcgacgatttcgagcgcctc
aatgcccgccagcgcgaacgcggcgagaagaccttcgtcaacccgcgcaacaccgccgcc
ggcgcggtgcgccagctcgacccgaagatggccgccgagcgcccgctatcgtttttcgcc
tatggcctgggcgaagcggccggctgggcggagatgcccgggacgcacgccggcgtgctc
gacgcgctggttgccttcggctttcctgtcagccacgagcgcgcggcggtgacgggcggc
gaggggctggtgcggttccacgccgacatccgcgccaagcgcgacagcctgccgttcgat
atcgacggcgtggtgtacaaggtcaactcgctggcgctgcagcgcgaactgggcttccgc
acgcgcgagccgcgctgggcggtggcgcacaagtacccggcgcaggaggcgctgaccacg
gtcgagtcgatcggcgtgcaggtcggccgcacgggtgccatcacgccggtggcgcgtctg
gtgccggtgttcgtcggcggcgtgacggtcaccaatgccaccctgcacaacgaagacgaa
gtccgccgcaaggacgtgcgcgtcggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atccccgaggtggtggccgtggtgctcgagcgccgcccgatggaagacgtgccgggcagc
gacctgttcaaccccgcgcagcagcccaagtatccgccgttcgagctgcccaagagctgc
ccggtctgcggctcgcacgtggtgcgggaagagggcgaggcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggcgatccgccatttcgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctggaatacgtg
cacggcatcgccgatctgtacaggctcacgctcgacgatttcctggagatgaagcgacgc
gccgacgagcgcgatggtgtgacgccggagaccgtggctgccggcaagatcgccaccaaa
tgggcggagaacctgctggccggtatccaggccagcaagacgccgccgctggcgcgcttc
ctgttcgcgctgggcattcgccatgtcggcgaatcgacggccaagacgctggccgactgg
ctgggcagcctggcggtgatccgccgcgcaccggcgccgctgctgctgaccctgcccgac
gtcggggcgacggtcgccgaggccatcgccgatttctttgccgagccgaagaaccagcag
gcgctcgacgccttgctcgccgccggcgtgacgccccagggcgagcacccgcccggcgcg
aagctgcgcgaccagctggagcccgccgaactgtacgccgcgctcggcgtgcccaagctg
acggccacccgcagcaagcaactggcgacgctggtgccggcgctcgcgcagctggccacc
gccgatgccgcgcagttggagggcttgcccgcggatgtgtcggcgtcgctgctcgactgg
ctcgaggccgacgaccatcgcgcccggctggcgcagctggaagcgctgcgcgccgaactg
ctcgccgccatgccggccgggaccgccgaggaaggcgcgctgagcggaaagaccgtggtg
ctgaccggcacgctgcccaacctgacccgcgacgcggccaaggccatgctggaggccgcc
ggtgccaaggtttccggctcggtgtcgaagaagaccgattacctggtggccggcgttgag
gcgggcagcaagctcgcccgggcgcaggagctgggcgtgcgggtcctggacgaagccggt
atgctcgcgctgttgcagaacccgccaggagattccgcgtga
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