Ralstonia solanacearum CMR15: CMR15_20120
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Entry
CMR15_20120 CDS
T02725
Symbol
nth
Name
(GenBank) endonuclease III; DNA glycosylase/apyrimidinic (AP) lyase, acts on 5-formyluracil and 5-hydroxymethyluracil
KO
K10773
endonuclease III [EC:3.2.2.-
4.2.99.18
]
Organism
rsm
Ralstonia solanacearum CMR15
Pathway
rsm03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
rsm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CMR15_20120 (nth)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
rsm03400
]
CMR15_20120 (nth)
Enzymes [BR:
rsm01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CMR15_20120 (nth)
DNA repair and recombination proteins [BR:
rsm03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CMR15_20120 (nth)
Prokaryotic type
CMR15_20120 (nth)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HhH-GPD
HHH
RecR_HhH
EndIII_4Fe-2S
Motif
Other DBs
NCBI-ProteinID:
CBJ38165
LinkDB
All DBs
Position
complement(2075552..2076196)
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AA seq
214 aa
AA seq
DB search
MNPAKRRALFETLREHNPTPTTELEYTTPFELLIAVLLSAQATDVGVNKATRKLYPVADT
PAKMLALGEEGLTAYIKTIGLYRTKCKHILQTCRILLDQYGGQVPRDRAALEALPGVGRK
TANVVLNTAFGEPTIAVDTHIFRVANRTGLAPGKNVLEVELKLLKVVPEEFRQDAHHWLI
LHGRYVCRARKPECWHCAIEPLCEFRPKTPAPKE
NT seq
645 nt
NT seq
+upstream
nt +downstream
nt
atgaaccccgccaagcgccgcgccctcttcgaaacgctccgcgaacacaacccgacgccg
accaccgagctggaatacaccacgccgttcgagctgctgatcgccgtgctgctgtcggcc
caggcgaccgacgtgggcgtgaacaaggccacgcgcaagctttacccggtggccgacacg
ccggccaagatgctggcgctgggcgaggaaggcctgaccgcctacatcaagaccatcggc
ctgtaccgcaccaagtgcaagcacatcctgcagacctgccgcatcctgctcgaccagtac
ggcggccaggtcccgcgcgaccgcgccgcgctggaagccttgccgggcgtgggccgcaag
accgccaacgtggtgctgaacacggccttcggcgagccgaccatcgcggtcgacacgcac
atcttccgcgtcgccaaccgcaccgggctggcgccgggcaagaacgtactggaagtcgag
ctgaagctgctgaaggtggtgccggaggagttccgccaggatgcgcaccactggctgatc
ctgcacgggcgctacgtgtgcagggcccgcaagcccgaatgctggcactgcgcgatcgag
ccgctatgcgagttcaggccgaagacgccggcgccgaaggaataa
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