Ralstonia pseudosolanacearum GMI1000: RSc1398
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Entry
RSc1398 CDS
T00071
Symbol
ligA
Name
(GenBank) putative dna ligase (polydeoxyribonucleotide synthase [nad+]) protein
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rso
Ralstonia pseudosolanacearum GMI1000
Pathway
rso03030
DNA replication
rso03410
Base excision repair
rso03420
Nucleotide excision repair
rso03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rso00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSc1398 (ligA)
03410 Base excision repair
RSc1398 (ligA)
03420 Nucleotide excision repair
RSc1398 (ligA)
03430 Mismatch repair
RSc1398 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rso03032
]
RSc1398 (ligA)
03400 DNA repair and recombination proteins [BR:
rso03400
]
RSc1398 (ligA)
Enzymes [BR:
rso01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSc1398 (ligA)
DNA replication proteins [BR:
rso03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSc1398 (ligA)
DNA repair and recombination proteins [BR:
rso03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSc1398 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSc1398 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSc1398 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSc1398 (ligA)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DNA_ligase_aden
OB_DNA_ligase
Nlig-Ia
HHH_2
BRCT
DNA_ligase_ZBD
PTCB-BRCT
HHH_5
DUF4796_N
HHH
Motif
Other DBs
NCBI-ProteinID:
CAD15100
UniProt:
Q8XZJ7
LinkDB
All DBs
Position
1493654..1496095
Genome browser
AA seq
813 aa
AA seq
DB search
MSKTEHPASGASPETRAAALRATLNRYAHEYYVLDQPSVPDAEYDRLYRELEALEAEHPE
LRTPDSPTLRVGGAVLPEFAPVRHVVPMLSIRTETDTTAGGALDFDASVRRELGLAESDP
PVEYAAELKFDGLAINLRYEKGFLVQAATRGDGATGEDVTQNIRTIRQIPLGLRPVGGAV
PDVLEVRGEVYMRRDDFERLNARQRERGDKTFVNPRNTAAGAVRQLDPKMAAERPLSFFA
YGLGEAAGWSGMPDTHSGMLDALVAYGFPVSKERAAVKGGEGLVQFHAAIGAKRDSLPFD
IDGVVYKVNSLALQRELGFRTREPRWAVAHKYPAQEALTTVESIGVQVGRTGAITPVARL
VPVFVGGVTVTNATLHNEDEVRRKDVRVGDTVIVRRAGDVIPEVVAVVLERRPMEDVPGS
DLFNPTQQPKHPPFELPRSCPVCGSHVVREEGEAVARCSGGLFCSAQRKEAIRHFAGRRM
MDIEGLGERYIDNLVELEYVHGIADLYRLTLDDFLEMKRRADERDGVTPETVAAGKIATK
WAENLLDGIRASKTPPLARFLFAMGIRHVGESTAKTLADWLGSLAIVRRAPAPLLLTLPD
VGATVAEAIADFFAEPKNQQALDALLTAGVAPQGEHPPSAKLRDQLEPAELYAALGVPKL
TAIRSKQLATLVPSLAQLANVDTAQLEGLPADVAASLLAWLDADDHRTRLGTLDALRAEL
LAAMPAGAAEEGALSGKTVVLTGTLPTLSRDEAKAMLEAAGAKVSGSVSKKTDYVVAGVE
AGSKLARAQELGVRVLDEAGMLALLQNPPGDSA
NT seq
2442 nt
NT seq
+upstream
nt +downstream
nt
atgagcaagaccgaacatcccgcgtccggcgcgtcgcccgagacgcgggcagccgcgctg
cgcgcgacgctgaaccgctacgcccacgagtactacgtgctggaccagcccagcgtgccg
gacgccgaatacgaccggctctaccgcgagctggaagccctggaagccgaacacccagaa
ctgcggacgccggattcgcccacgctgcgggtcggcggcgccgtgctgccggagttcgcg
ccggtgcggcacgtggtgccgatgctctcgatccgcaccgagaccgacaccaccgccggc
ggcgcgctggacttcgatgccagcgtgcgccgcgaactggggctggccgaatccgatccg
cccgtcgaatacgcggcggagctcaagttcgatggcctggcgatcaacctgcgctacgag
aaaggcttcctggtccaggccgccacgcgcggcgacggggccaccggcgaagacgttacg
cagaacatccgcaccatccgccagatccccctcggcctgcggcccgtcggcggcgccgtg
cccgacgtgctcgaagtgcgcggcgaggtctacatgcggcgcgacgatttcgagcgcctc
aatgcccgccagcgcgagcgcggcgacaagaccttcgtcaacccgcgcaacaccgctgcc
ggcgcggtgcgccagctcgacccgaagatggccgccgagcgcccgctgtcgttcttcgcc
tatggcctgggcgaggcggccggctggagcgggatgcccgacacgcattccggcatgctc
gatgcactggtcgcctacggtttcccggtcagcaaggaacgtgcggcagtgaagggcggg
gaagggctggtgcaattccacgccgccatcggcgccaagcgcgacagcctgccgttcgat
atcgatggcgtggtctacaaggtcaactcgctggcactgcagcgcgagctgggctttcgc
acgcgcgagccgcgctgggcggtggcgcacaagtacccggcgcaggaggcgctgaccacg
gtcgagtcgatcggcgtgcaggtcggccgcaccggggccatcacgccggtggcgcgtctg
gtgccggtgttcgtcggcggcgtgacggtcaccaacgcgaccctgcacaacgaagacgaa
gtccgccgcaaggacgtgcgcgtgggcgacaccgtgatcgtgcgccgcgccggcgacgtg
atccccgaggtggtggccgtggtgctggagcgccgcccgatggaagacgtgccgggcagc
gatctgttcaaccccacgcagcagcccaagcatccgccgttcgaactgcccaggagttgc
ccggtctgcggctcgcacgtggtgcgcgaagagggcgaggcggtggcgcgctgctcgggc
ggcctgttctgctcggcgcagcgcaaggaggcgatccgccatttcgccggccgccgcatg
atggacatcgaaggcctgggcgagcgctacatcgacaacctcgtcgagctggaatacgtg
cacggcatcgccgacctgtaccggctcacgctcgacgatttcctcgaaatgaagcgccgc
gccgacgagcgcgacggcgtgaccccggagaccgtggccgccggcaagatcgccaccaag
tgggccgagaacctgctggacggcatccgggccagcaagaccccgccgctggcgcgcttc
ctgttcgcgatgggcatccgccatgtcggcgaatcgacggccaagacgctggccgactgg
ctgggcagcctggcgatagtccgccgcgcgccggcgccgctgctgctgaccttgcccgac
gtgggggcgaccgtcgccgaggccatcgccgatttctttgccgagccgaagaaccagcag
gcgctcgacgccctgctcaccgccggcgtggcgccccagggcgagcacccgcccagcgcg
aagctgcgcgaccaactggagcccgccgaactgtacgccgcgctcggcgtgcccaagctg
acggccatccgcagcaagcagctggcgacgctggtgccgtcgctcgcgcaactggccaac
gtcgacaccgcgcagctggaaggcctgccggcggacgtggcggcgtcgctgctggcctgg
ctggatgccgacgaccatcgcacccggctggggacgctggacgcgctgcgcgccgaactg
cttgccgccatgccggccggggccgccgaggaaggcgcgctgagcggcaagaccgtggtg
ctgaccggcacgctgcccaccctgagccgcgacgaggccaaggccatgctggaggcggcc
ggcgccaaggtgtccggctcggtgtcgaagaagaccgactacgttgtggctggcgttgag
gcgggcagcaagctcgcccgcgcgcaggagctgggcgtgcgggttctggacgaagccggt
atgctcgcgctgttgcagaacccgccgggagattccgcgtga
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