Cereibacter sphaeroides 2.4.1: RSP_2622
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Entry
RSP_2622 CDS
T00284
Symbol
ligA
Name
(GenBank) DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsp
Cereibacter sphaeroides 2.4.1
Pathway
rsp03030
DNA replication
rsp03410
Base excision repair
rsp03420
Nucleotide excision repair
rsp03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
RSP_2622 (ligA)
03410 Base excision repair
RSP_2622 (ligA)
03420 Nucleotide excision repair
RSP_2622 (ligA)
03430 Mismatch repair
RSP_2622 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsp03032
]
RSP_2622 (ligA)
03400 DNA repair and recombination proteins [BR:
rsp03400
]
RSP_2622 (ligA)
Enzymes [BR:
rsp01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
RSP_2622 (ligA)
DNA replication proteins [BR:
rsp03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
RSP_2622 (ligA)
DNA repair and recombination proteins [BR:
rsp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
RSP_2622 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
RSP_2622 (ligA)
MMR (mismatch excision repair)
DNA ligase
RSP_2622 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
RSP_2622 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Nlig-Ia
Motif
Other DBs
NCBI-ProteinID:
ABA78779
UniProt:
Q3J355
LinkDB
All DBs
Position
1:1260312..1262426
Genome browser
AA seq
704 aa
AA seq
DB search
MQDERPVDQLTEAEAAAELARLAEAIEAANTAYHTHDAPQISDADYDALKVRNRAIEEQF
PELRRSDSPSDRVGGALAEGFAKVRHDVRMLSLENAFDLAEVEDWIERIRRYLGHVGDLL
FTAEPKIDGLSLSLRYEKGRLVQAATRGDGETGENVTENARTIADLPTELDGAPDLLEVR
GEVYMSHEDFAALNGRQEAAGQRLFANPRNAAAGSLRQLDPAVTASRPLRFFAYAWGAHS
EPLAATQHEAIARLAALGFATNPLTRLCTGPEELLAQHAQIERQRAALGYDIDGVVYKVD
DLALQRRLGFRASTPRWAIAHKFAAQLAWTQLEGIDIQVGRTGALSPVARLKPVTVGGVV
VANATLHNEDYIAGRDSKGQEIRGGKDIRVGDWVQVYRAGDVIPKVADVDLDRRPEGAAP
YRFPETCPECGSEAIREPGDSVRRCTGGLICPAQQVERLKHFVSRAAFDIEGLGAKQVEA
LWRDGWIRQPADIFELPNRYRDGMQRLENREGWGRKSAENLFAAIEARRRIALHRLIFAL
GIRHVGETTATLLATHYGSWAAFEAAMTRAEVGAGPEWQDLLSIDGVGAVLATSLVTAFH
QEAERAAVDALAAHLTVEDAEVRAPVASPVAGKIVVFTGTLEKMSRAEAKARAEALGAKV
SGSVSARTDLVVAGPGAGSKAKQAAALGIETIDEDGWLRLIGDA
NT seq
2115 nt
NT seq
+upstream
nt +downstream
nt
atgcaggacgagaggccggtggatcaactgaccgaggcggaagccgcggccgagcttgca
cggctggcagaggcgatcgaggctgcgaataccgcctaccacacccacgacgcgccgcag
atcagcgacgcggactatgacgcgctcaaggtgcgcaaccgggccatcgaggagcagttc
ccggagctccgccggagcgacagcccgagcgaccgggtgggcggggcgctggccgaagga
tttgcgaaggttcgccacgatgtgcggatgctctcgctcgagaatgcgttcgaccttgcc
gaggtcgaggactggatcgagcggatccggcgttatctcggccatgtgggcgaccttctg
ttcacggccgaaccgaagatcgacgggctctcgctgtctctccgctacgagaaggggcgt
ctcgtgcaggcggcgacccgcggcgacggcgagaccggcgagaatgtgaccgagaacgcc
cgcaccatcgcggacctgcccaccgagctcgacggcgcgccggacctgctcgaggtgcgc
ggcgaggtctacatgagccacgaggatttcgcggcgctgaatggccggcaggaggccgcg
ggccagcgcctcttcgccaacccgaggaatgcggccgcgggctcgctccgccagctcgat
ccggctgtcaccgcctcgcgcccgctgcgcttcttcgcctatgcctggggcgcccattcc
gagccgctggccgccacgcagcacgaggccatcgcccgtctggccgctttgggctttgcc
acgaacccgctcacccgcctttgcacggggcccgaggagcttctggcgcaacatgcccag
atcgagcggcagcgtgcggcgctgggctatgacatcgacggtgtggtctacaaggtcgac
gatctggcgctgcagcggcggctgggctttcgggcctcgacgccgcgctgggccatcgcg
cacaagttcgcagcccagctcgcctggacccagctcgaggggatcgacattcaggtcggc
cgcaccggcgccctgtcgcctgtggcgcgcctcaagccggtgacggtgggcggggtcgtg
gtggccaatgccacgctccacaacgaggattacatcgccggccgcgattcgaaggggcag
gagatccgcggcggcaaggacatccgcgtgggcgactgggtgcaggtctaccgtgcgggc
gacgtgatccccaaggtggccgatgtcgatctcgaccgccgccccgagggggctgcgccc
taccgctttcccgagacctgccccgagtgcggctccgaagccatccgcgagccgggcgat
tcggtgcgccgctgcaccggcggcctgatctgcccggcccagcaggtcgagcggctgaag
catttcgtctcgcgcgcggccttcgatatcgaggggctcggcgcaaagcaggtcgaggcg
ctctggcgcgacggctggatccgccagcccgccgacatcttcgagctgccgaaccgctac
cgcgacgggatgcaacggctcgagaatcgggagggctgggggcggaaatcggccgagaat
ctcttcgcggccatcgaggcgcggcggcgcatcgcgctccaccggctgatcttcgcgctg
ggcatccgccatgtgggcgaaaccacggccacgcttctggccacccactacggctcctgg
gccgctttcgaggccgcgatgacccgcgccgaggtgggcgcggggcccgagtggcaggac
cttctctccatcgacggcgtgggggcggtgcttgccacatcgctcgtcaccgccttccat
caggaggccgagcgggcggcggtcgacgcgcttgcggcccatctgaccgtcgaggatgcc
gaggtgcgcgccccggtcgcgagccccgtcgcgggcaagatcgtggtcttcaccggcacg
ctcgagaagatgtcgcgcgccgaggccaaggcgcgggccgaggcgctgggggcgaaagtg
tccggctcggtttcggccaggaccgatctcgtggtggcggggccgggggcgggatccaag
gccaagcaggccgcggcgctcggcatcgagacgatcgacgaggacggttggctgcgcctg
atcggggacgcatga
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integrated database retrieval system
