Rummeliibacillus stabekisii: ATY39_11940
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Entry
ATY39_11940 CDS
T04369
Symbol
ligA
Name
(GenBank) DNA ligase (NAD(+)) LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rst
Rummeliibacillus stabekisii
Pathway
rst03030
DNA replication
rst03410
Base excision repair
rst03420
Nucleotide excision repair
rst03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rst00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
ATY39_11940 (ligA)
03410 Base excision repair
ATY39_11940 (ligA)
03420 Nucleotide excision repair
ATY39_11940 (ligA)
03430 Mismatch repair
ATY39_11940 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rst03032
]
ATY39_11940 (ligA)
03400 DNA repair and recombination proteins [BR:
rst03400
]
ATY39_11940 (ligA)
Enzymes [BR:
rst01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
ATY39_11940 (ligA)
DNA replication proteins [BR:
rst03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
ATY39_11940 (ligA)
DNA repair and recombination proteins [BR:
rst03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
ATY39_11940 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
ATY39_11940 (ligA)
MMR (mismatch excision repair)
DNA ligase
ATY39_11940 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
ATY39_11940 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
DNA_ligase_ZBD
HHH_5
Nlig-Ia
PTCB-BRCT
RNA_pol_A_CTD
AphA_like
BRCT_2
Zn_ribbon_NUD
Motif
Other DBs
NCBI-ProteinID:
AMX00071
UniProt:
A0A143HF00
LinkDB
All DBs
Position
complement(2394892..2396898)
Genome browser
AA seq
668 aa
AA seq
DB search
MDRVQLENRVAELNKLLHEYGHAYYVLDQPIVPDAIYDQLLHELIAIEEENPDLIFPDSP
TRRVGGEILTGFNKVTHQYPMLSLGNAFNEEDLNDFDRRVRQVVGDQVTYVCELKIDGLA
ISLRYEDGLFVQGATRGNGTVGEDITENLKTVHSIPLRLKEPVSIEARGECYMPKRSFTN
LNKMRAEKGDELFANPRNAAAGSLRQLDPKVAASRNLSTFIYAMGGNGEAYGLESHSEAL
DYMDHLGFQTNHERRKFTNMREVMAYIEEWTEQRPTLPYEIDGIVIKVDSYNQQEELGNT
VKVPRWSIAYKFPAEEVVTTVLDIDLTVGRTGVVTPTAILQPVQVAGTTVGRATLHNEDI
IREKDVRIGDQVIIRKAGDIIPEVVSVLFDQRKEDSEPFVMPTHCPVCDSELVRIEGEVA
LRCVNPQCFAQISEGMAHFVSRNAMNIDGLGEKVVEQLLRSGLVKDVSDLYRLTVDELVQ
LERMGEKSATNLVNAIAASKGNSLERLLFGLGIRHVGAKAARLLAEEFETMDRLIGATET
ELVNVFEIGDKMADSVLTYFDNEDVLALISRLKEAGVNMNYLGKKVNAAEIDSPFSGKTI
VLTGKLEQLTRDDAKVKIEELGGKVTGSVSKKTDLVIAGTEAGSKLAKAEDLGIEVWDED
RLLEELRE
NT seq
2007 nt
NT seq
+upstream
nt +downstream
nt
atggaccgagttcaattggaaaacagagtggcggagttaaacaaacttcttcatgaatac
gggcacgcttactatgtattggatcagcccatcgtacctgatgctatctacgatcaattg
ctacatgaattgattgctatcgaagaagaaaatcctgaccttatttttccggattcacca
acaagacgagtgggcggagaaatactgacagggtttaacaaagtgacgcatcaatatccg
atgttgagtttaggaaatgcgtttaatgaagaagatctaaacgattttgaccgccgtgta
cgccaggtggttggagatcaggtcacatatgtatgtgagctgaaaattgacggtctagcg
atttcactccgttatgaagacgggctttttgtacaaggtgccacgcgcgggaatgggaca
gttggcgaggacatcacagaaaacctgaaaactgttcattccattccgctgcgtttaaaa
gaacctgtcagtattgaagcacgcggcgaatgctatatgccaaagcgttcatttactaat
ttgaataagatgagggcagaaaaaggcgatgagctctttgctaatccgcgaaatgctgca
gctggttcgcttcgtcagcttgatccaaaggtagcagccagcagaaatttatcgacattc
atttatgcgatgggtggtaacggcgaagcatatggccttgaaagccatagtgaagcactt
gattatatggaccatttgggctttcaaacaaaccatgagagaagaaagttcactaatatg
agagaagtaatggcgtatatcgaggaatggacagagcaacgcccaacactgccgtatgag
attgatggcattgtcatcaaagtagacagctacaaccagcaagaagaactagggaatacc
gtcaaagttcctcgttggtctatcgcgtataaattcccagctgaggaagttgtaacaact
gttttagacattgacttaactgtgggccggacaggggttgtgacaccgactgccatcttg
cagcctgtccaagtagcagggacaactgttggacgtgcaacgcttcataatgaagatatc
attcgtgaaaaagatgtgcgcatcggcgatcaggtcatcatccgaaaagcgggtgatatt
attcctgaagtggtatctgtactgtttgatcaacgaaaagaggatagcgaacctttcgtt
atgccgacacattgtccggtatgcgacagtgaacttgttcgcattgaaggggaagtagcc
ttgcgctgcgtcaacccgcaatgctttgcccaaatatcagaaggaatggcacacttcgtc
tcacgcaatgccatgaatatcgatggattgggtgaaaaggttgtagaacaattgttaagg
tctgggctggttaaagatgtatctgatttgtaccgccttactgttgatgaattggtacag
ctcgagcgcatgggtgagaaatctgcaaccaatttagtgaacgcgattgcagcctctaag
gggaattcattagagcgcttattgttcggcttaggcatccgacatgtcggcgccaaagca
gcaaggctactggctgaagaatttgaaacgatggatcgcttaatcggtgcgacagaaaca
gaattagtgaacgtctttgaaattggcgataaaatggcggattcagtcttgacgtatttc
gataatgaagacgtgttggccttgatctcacgtttaaaagaagctggcgtcaacatgaat
taccttggcaagaaggtgaacgcagcggaaatcgacagtccattttcaggaaaaacaatt
gtcctgaccggtaaattagaacaattgacaagagacgatgcaaaagtgaaaatagaagag
ttaggaggcaaagtcacaggcagcgtcagcaaaaagacggacctggtcattgccggaaca
gaggcaggctctaaactcgcaaaagccgaagatttgggcattgaagtgtgggatgaggac
cgcctgcttgaagaattaagagagtaa
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