Rhodovulum sulfidophilum: NHU_02076
Help
Entry
NHU_02076 CDS
T04143
Name
(GenBank) NAD-dependent DNA ligase
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsu
Rhodovulum sulfidophilum
Pathway
rsu03030
DNA replication
rsu03410
Base excision repair
rsu03420
Nucleotide excision repair
rsu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
NHU_02076
03410 Base excision repair
NHU_02076
03420 Nucleotide excision repair
NHU_02076
03430 Mismatch repair
NHU_02076
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsu03032
]
NHU_02076
03400 DNA repair and recombination proteins [BR:
rsu03400
]
NHU_02076
Enzymes [BR:
rsu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
NHU_02076
DNA replication proteins [BR:
rsu03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
NHU_02076
DNA repair and recombination proteins [BR:
rsu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
NHU_02076
NER (nucleotide excision repair)
GGR (global genome repair) factors
NHU_02076
MMR (mismatch excision repair)
DNA ligase
NHU_02076
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
NHU_02076
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
BRCT
HHH_2
DNA_ligase_ZBD
HHH_5
PTCB-BRCT
Bep_C_terminal
Nlig-Ia
Transposase_20
Motif
Other DBs
NCBI-ProteinID:
BAQ69230
UniProt:
A0A0D6B306
LinkDB
All DBs
Position
complement(2173422..2175542)
Genome browser
AA seq
706 aa
AA seq
DB search
MTDERPVEALSESEARAELARLAEAVAKADAAYHQEDAPTLSDAAYDALKRRNAAIEARF
PALKRPDSPSDRVGAAPAEGFAKVAHVRRMLSLANAFDGTDVAEFDARIRRYLGLAAEAR
LLYTAEPKIDGLSLSLRYEGGRLVQAATRGDGELGENVTANARTISDIPGTLEGAPDILE
VRGEVYMAHADFEALNARQAATGAKTFANPRNAAAGSLRQLDPAITAARPLKFFAYAWGE
VSTPLAATQMEAIERLKALGFQVNPLTVLCDGPEALAAHYAGIEQRRATLGYDIDGVVYK
VNDLALQERLGFRATTPRWAIAHKFPAELAWTRLDRIEIQVGRTGALSPVARLHPVTVGG
VVVSNATLHNEDYIAGRDSKGNEIRGGKDIREGDWVQVYRAGDVIPKVADVDLAKRPDDT
LPYRFPSLCPECGSEAIREESDAVRRCSGGLICPAQAVERLKHFVSRGAFDIEGLGAKQV
EALYKDGWITEPADIFELEARYGEGGRQLKNREGWGEKSAANLFAAIETRRLIPLDRLIF
ALGIRHLGEAAADLLARNFQTWAAFEAAVTQATVGEGPEWEALLSIDGVGTVMATSLITA
FHQEAERASIDRLVAHLTVEPVAPRAAVDGPVAGKTVVFTGTLEKMSRAEAKARAEALGA
KVAGSVSKKTDLVVLGPGAGSKAKKAEELGIETVDEDGWLALIEGA
NT seq
2121 nt
NT seq
+upstream
nt +downstream
nt
atgaccgacgaacgtccagtcgaagcgctgtcggagagtgaggcacgggcagagttggcc
cggctggccgaggctgttgccaaggccgatgccgcctatcaccaggaagacgcgcccacc
ctgtcggacgcggcctatgacgcgctcaagcggcgcaatgcggcgatcgaggcccggttc
ccggcgctcaagcggcccgacagcccgtcggaccgggtcggggccgcccccgccgaaggc
ttcgccaaggttgcgcatgtccggcgcatgttgtcgctggccaatgccttcgacggcacg
gatgtggccgagttcgatgcccgtatccgccgctatctggggctcgcggccgaggcgcgg
cttctttataccgccgagcccaagatcgacgggctctcgctgtccctgcgctatgaaggc
ggtcggctggtccaggccgcgacccggggcgatggcgagctcggcgagaatgtcaccgcc
aatgcccgcaccatctccgacatacccgggacactggagggggcccccgacatcctcgag
gtccggggcgaggtctacatggcccatgccgatttcgaggcgctgaacgcgcgtcaggcc
gcgaccggggccaagaccttcgccaatccgcgcaatgccgccgccggctcgttgcgccag
ctcgatcccgccatcaccgccgcccggccgctgaaattcttcgcctatgcctggggcgag
gtctcgacccccctggccgcgacccagatggaggcgatagagcggctgaaggcgctgggg
ttccaggtcaatccgctgacggtgctgtgcgatggccccgaggcgctggccgcacattac
gccgggatcgaacagcgccgcgcgacgctgggctatgacatcgacggcgtggtctacaag
gtgaatgacctcgccctgcaggagcgcctgggctttcgcgcgaccacgccccgctgggcc
atcgcccataaattcccggccgagcttgcctggacccggctcgaccggatcgagatccag
gtcggccgcaccggggcgctgtcgccggtggcacggctgcatccggtgacggtgggcggc
gtcgtcgtctcgaacgcgacgctgcataacgaggattacatcgccggccgcgattcgaag
ggcaacgagatccggggcggcaaggacatccgcgaaggcgactgggtgcaggtctatcgc
gcgggcgacgtgatcccgaaagtggccgatgtcgatctcgccaagcgccccgacgacacc
ctgccttatcggtttcccagcctgtgccccgaatgcggttctgaggcgatccgcgaagag
agcgatgcggtccggcgttgctcgggcgggctgatctgcccggcccaggcagtcgagcgg
ctcaagcatttcgtcagccgcggcgccttcgacatcgaggggctgggcgccaagcaggtc
gaggcgctttacaaggacggctggatcaccgagcccgccgacatattcgaactcgaggcg
cgatatggcgagggcggcaggcaactgaagaaccgcgagggctggggcgagaaatccgcc
gccaatcttttcgcggcgatcgagacgcggcgtttgatcccgctcgaccggctgatcttc
gcgctcggcatccgccatctgggcgaggccgcggccgatcttctggcccgcaacttccag
acatgggcggccttcgaggcggcggtcacgcaggccacggtgggcgagggcccggaatgg
gaagcgcttctgagcatcgatggggtgggcacggtgatggccacttcgctgatcaccgcc
ttccaccaggaggccgaacgcgcctcgatcgaccggctggtcgcgcatctgacggtcgaa
ccggtggcgccgcgggcggccgtcgacggccccgtcgcgggcaagaccgtggtcttcacc
ggcacgctcgagaagatgagccgggccgaggccaaggcgcgggccgaggcgctgggggcc
aaggtcgcgggctcggtctcgaagaagaccgatctggtcgtcttgggccccggtgcgggc
tcgaaggcgaagaaggccgaggaactggggatcgagaccgtcgacgaggacggctggctg
gcattgatcgagggcgcatga
DBGET
integrated database retrieval system
