Ruania suaedae: LQF12_11270
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Entry
LQF12_11270 CDS
T08275
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsua
Ruania suaedae
Pathway
rsua03030
DNA replication
rsua03410
Base excision repair
rsua03420
Nucleotide excision repair
rsua03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsua00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
LQF12_11270 (ligA)
03410 Base excision repair
LQF12_11270 (ligA)
03420 Nucleotide excision repair
LQF12_11270 (ligA)
03430 Mismatch repair
LQF12_11270 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsua03032
]
LQF12_11270 (ligA)
03400 DNA repair and recombination proteins [BR:
rsua03400
]
LQF12_11270 (ligA)
Enzymes [BR:
rsua01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
LQF12_11270 (ligA)
DNA replication proteins [BR:
rsua03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
LQF12_11270 (ligA)
DNA repair and recombination proteins [BR:
rsua03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
LQF12_11270 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
LQF12_11270 (ligA)
MMR (mismatch excision repair)
DNA ligase
LQF12_11270 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
LQF12_11270 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
DNA_ligase_ZBD
BRCT
HHH_5
Nlig-Ia
HHH
PTCB-BRCT
HHH_8
Motif
Other DBs
NCBI-ProteinID:
UFU04661
LinkDB
All DBs
Position
complement(2443703..2446099)
Genome browser
AA seq
798 aa
AA seq
DB search
MGTVNDASTPTDDATLDPAVRSRWDELAAQVRRAREAYYNEDSQLLSDAEFDELFHELET
LEAEHPELRDPDSPTQMVGGSRSALFDPVEHAERMLSLDNVFSVVELTEWAAKTAAAAAR
APAWLCELKIDGLAISLRYERGRLTSAATRGDGRTGEDVTINALRVAGIPERLEGTGHPE
LVEVRGEVFIPTQSFAQLNDLQAELQERAVEAARQRWQARAASKAEFDEQREATAAARRF
PAFANPRNAASGGLRQQLEKKAGLEREAGDARVAALRLYVHGIGAWPRPPVAAQSEIYDL
LAGWGLPVSPYSKVCSTIEEVAAFVEHHGAHRHDVEHEIDGVVVKVDELALHEELGATSR
APRWAIAYKYPPEEVHTTLLDIAVGVGRTGRATPYGVMEPVLVAGSVVRQATLHNQDVVR
AKGVLIGDTVVLRKAGDVIPEILGPVVELRDGSEREFVMPAECPECGTALRPMKEGDIDL
RCPNAESCPAQVRGRVEHIGSRGGLDIEALGEVTAAALTQPRVPRTPPLVTEARLFDLAI
DELVPIEVVVRDAETGEPKTDDDGEPSVRRPFQKTVRRYPPEAEGMTAAERRQAGLRQIE
QVVPSSQAETLIAELEKAKTKELWRQLVSLNIRHVGPVAARALAEWFGSLDAIEKAGEDE
LAQVEGVGPAIAAAVTEWLTVDWHQQVLSQWRAAGVRFAIPDHLGPGAAREEGPLTGLTV
VVTGSMEHFSRDGAKEAIIAAGGKAAGSVSKKTDYVVVGPGAGSKETKARDLGLTILDEA
GFQALLEGGPDAVADRET
NT seq
2397 nt
NT seq
+upstream
nt +downstream
nt
atggggaccgtgaacgacgcatcgacccccaccgacgacgccacgctcgaccctgcggtc
cgttcgcgctgggacgagctcgcggcccaggtgcgccgcgcgcgtgaggcgtattacaac
gaggacagccagctgctctccgacgccgagttcgacgaattgttccacgagctcgagacg
ctcgaggccgagcaccccgagctccgcgaccccgactcgccgacccagatggtgggaggc
tcgcgttcggcgctgttcgacccggtggagcacgccgagcggatgctcagcctcgacaac
gtcttctcggtggttgagctcaccgagtgggccgccaagaccgccgccgcggccgcgcgc
gccccggcctggctgtgtgagctcaagatcgacggcctggcgatctcgttgcgctacgaa
cgcgggcgtctgaccagtgcggccacccgcggcgacggccgcacgggggaggacgtgacg
atcaacgccctccgggtggccgggattccggagcggctcgagggcaccgggcaccccgag
ctggtggaggtgcgcggcgaggtgttcatccccacccagtcgttcgcgcagctgaacgac
ctccaggccgagctccaggagcgggcggtggaggcggcccggcaacgatggcaggcgcgc
gctgcgagcaaggccgagttcgacgagcagcgtgaggcgaccgccgctgcccgccgattc
cccgccttcgccaacccgcgcaacgccgccagcggtggtctgcgccagcagttggagaag
aaggcgggcctggaacgtgaggccggcgacgcccgggtggcggcgctgcggctgtatgtc
cacggcatcggcgcctggcctcgccccccggtggccgcgcagagcgagatctacgacctg
ctcgccgggtggggactacccgtgagcccgtactcgaaggtctgcagcaccatcgaggag
gtggcggcgttcgtcgagcaccatggcgctcaccggcacgacgtcgagcacgagatcgac
ggcgtggtcgtcaaggtcgacgagctcgcgctgcacgaggagctcggcgccaccagccgt
gccccgcgctgggcgatcgcctacaagtacccgcccgaggaggtccacaccacgctgctc
gacatcgccgtgggcgtcgggcgtaccgggcgcgccaccccgtacggcgtgatggaaccg
gtgctcgtggccggcagcgtggtgcggcaagcgacgctgcacaaccaggacgtggtgcgt
gccaagggcgtgctcatcggggacacggtggtgctgcgcaaggccggggatgtgatcccg
gagatcctcgggccggtcgtggagctgcgggacgggagcgagcgcgagttcgtcatgcct
gccgagtgccccgagtgcgggacggcgctgcggccgatgaaggagggggacatcgatctg
cggtgccccaacgccgagtcctgcccggcgcaggtgcgtggccgggtcgagcacatcggc
tcccgcggcggcctcgacatcgaggcgctcggggaggtgacggcggccgccctcacccag
ccacgcgtgccgcggaccccgccgctggtgaccgaggcccggctgttcgacctcgcgatc
gatgaactcgtgccgatcgaggtggtcgtccgggacgccgagaccggcgagcccaagacc
gacgacgacggcgaaccctccgtccgccgtccgttccagaagaccgtccgcaggtaccca
ccggaggcggaggggatgacggcggccgagcggcgtcaggccggcctccgccagatcgag
caggtggtgccctcgagccaggccgagacgctgatcgccgagctggagaaggcgaagacc
aaggagctgtggcgccagctcgtcagcctcaacatccgacacgtgggcccggtcgccgcc
cgcgcgctcgccgagtggttcggatccctggacgccatcgagaaggccggcgaggacgag
ctcgcgcaggtggagggcgtcggtcccgcgatcgccgcggccgtcaccgagtggctgacg
gtggactggcatcagcaggtgctcagccagtggcgcgcggccggcgtgcgcttcgcgatc
cccgaccacctcggccccggggccgctcgggaggagggcccgctgaccggcctgaccgtg
gtggtgaccgggtcgatggagcacttctcccgcgacggcgcgaaggaggccatcatcgcc
gccggaggcaaggccgccggatcggtctccaagaagaccgactacgtggtggtcggcccg
ggcgccggctcgaaggagaccaaggcgcgagatctcgggttgaccatcctggacgaagcc
ggtttccaggctttgctggagggagggccggacgccgtcgccgaccgtgagacgtga
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