Rhizobium sullae: N2599_05390
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Entry
N2599_05390 CDS
T08545
Symbol
ligA
Name
(GenBank) NAD-dependent DNA ligase LigA
KO
K01972
DNA ligase (NAD+) [EC:
6.5.1.2
]
Organism
rsul
Rhizobium sullae
Pathway
rsul03030
DNA replication
rsul03410
Base excision repair
rsul03420
Nucleotide excision repair
rsul03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
rsul00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
N2599_05390 (ligA)
03410 Base excision repair
N2599_05390 (ligA)
03420 Nucleotide excision repair
N2599_05390 (ligA)
03430 Mismatch repair
N2599_05390 (ligA)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
rsul03032
]
N2599_05390 (ligA)
03400 DNA repair and recombination proteins [BR:
rsul03400
]
N2599_05390 (ligA)
Enzymes [BR:
rsul01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.2 DNA ligase (NAD+)
N2599_05390 (ligA)
DNA replication proteins [BR:
rsul03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
Other elongation factors
N2599_05390 (ligA)
DNA repair and recombination proteins [BR:
rsul03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA ligase
N2599_05390 (ligA)
NER (nucleotide excision repair)
GGR (global genome repair) factors
N2599_05390 (ligA)
MMR (mismatch excision repair)
DNA ligase
N2599_05390 (ligA)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
RecET pathway
N2599_05390 (ligA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_aden
DNA_ligase_OB
HHH_2
BRCT
HHH_5
DNA_ligase_ZBD
Nlig-Ia
PTCB-BRCT
HHH
RNA_ligase
Lar_restr_allev
Motif
Other DBs
NCBI-ProteinID:
UWU15442
LinkDB
All DBs
Position
1088931..1091087
Genome browser
AA seq
718 aa
AA seq
DB search
MPTESVAVEDLTIDDAATELARLAKEVAHHDALYHGKDQPEISDADYDALKRRNDAIEAR
FPELIREDSPSRRVGAAPSVTFAPVVHARPMLSLDNTFSQEDVQDFVAGVYRFLGRLPDQ
SIAFTAEPKIDGLSMSIRYENGRLVTAATRGDGTTGENVTANIRTIKEIPNELPKGVPAV
VEIRGEVYMAKSDFMALNKQMEAEGKQTYVNPRNTAAGSLRQLDAKVTASRKLKFFAYAW
GEMSEVPANTQFDMVQLFRDWGFPVNPLMKRLNSVADILTHYDEIGLKRPDLDYDIDGVV
YKVDSLELQQRLGFRSRSPRWATAHKFPAEQAFTTVENIDIQVGRTGALTPVARLTPVTV
GGVMVTNATLHNEDYIKGLGNSGEPIRDEEHDIRIGDTVIVQRAGDVIPQVLDVVLEKRS
TDAVPYAFPKRCPVCDSHAVRERNEKTGKLDSVTRCTGGFVCRAQATEHLKHFVSRNAFD
IEGLGSKQIDFFFESEDDALKIRTAPEIFTLERRQQNSLTKLENIEGFGKVSVGKLYAAI
NERRSIALHRFIYALGIRHVGETTAKLLARSYGTYEAFASAMKEAAPLSGDAWNDLNSIE
GIGEIVARAIVEFYKEPRNVEVISALLSEVTPQEAEQPVTSGSPVAGKTVVFTGSLEKFT
RDEAKAKAESLGAKVAGSVSKNTDIVVAGPGAGSKLDKARELGVQTMDEDGWLALIGR
NT seq
2157 nt
NT seq
+upstream
nt +downstream
nt
atgccgaccgagtccgttgccgttgaagacctgacgatcgatgatgccgccaccgagctt
gcgcggctggcgaaagaggtcgcccatcacgacgcgctttatcatggcaaggatcagccg
gagatttcggacgcggactatgacgcgctgaagcggcgcaacgatgcgatcgaggcgcgg
tttccggaactgatccgcgaagacagcccgtcgcgccgggtgggtgctgcaccctccgtc
acctttgcgccggtcgtccacgcccgcccgatgctgtcgctcgacaacacgttttcgcag
gaggatgtgcaggatttcgtcgccggtgtttatcgcttcctggggcgcctgccggaccag
tcgatcgcctttaccgccgaaccgaagatcgatgggctctccatgtcgatccgttacgag
aacggcaggctggtcacggccgcaacgcgcggcgacggcacgacgggtgagaatgtcacg
gccaatatccgcaccatcaaggaaattccgaatgaactgcccaagggcgttcccgccgtc
gtggaaatacgcggtgaggtctacatggcgaagagcgattttatggcgctcaacaagcag
atggaggccgagggaaagcagacctacgtcaacccgcgcaacacggcagccggatcgctg
cgccagctcgatgcgaaggtgaccgcgagccgcaagctgaaattcttcgcctatgcctgg
ggcgagatgtcggaggtgccggccaatacacagttcgacatggttcagctcttcagggat
tggggcttcccggtcaatccgctgatgaagcggctgaattccgtcgccgatattctcacc
cactacgacgagatcggcctgaagcgcccggacctcgactacgacatcgacggtgtcgtc
tacaaagttgacagccttgaactccagcagcgcctcggcttccgctcgcgcagcccgcgc
tgggcgaccgctcacaagtttccggcagaacaggcattcacgacggtcgaaaacatcgac
attcaggtcggccgcaccggcgcgttgacgccggtcgcgcggcttacgcccgtcactgtc
ggcggcgtgatggtgaccaacgcgaccctccacaacgaagactacatcaagggcctaggc
aattccggcgagcccatccgcgacgaggagcacgatatccggatcggcgatacggtgatc
gtgcagcgggccggcgacgtcattccgcaggtactcgatgtggtgctggaaaagcggtcg
acggacgcggtgccttacgcgtttccgaagcgctgcccggtctgcgattcgcatgctgtg
cgcgaaagaaacgagaagacgggaaagctcgattccgttacgcgctgcaccggcggcttc
gtgtgccgcgcgcaggcaacagagcatctcaagcacttcgtctcgcgcaacgcctttgac
atcgagggcctgggttcgaagcagatcgacttcttcttcgaaagcgaggatgacgcgctg
aagatccgcacggcgccggaaatcttcacgctggagcggcgacagcagaattcgttgacg
aaactcgaaaatatcgaaggtttcggcaaggtcagcgtcggtaagctctatgcggcgatc
aacgaacggcgcagcatcgcgcttcaccgcttcatctacgcgctcggcatccgccatgtc
ggcgagacaacggcaaagctgctggcgcgctcctacggcacttatgaggcttttgcctcg
gcgatgaaggaggccgcgccactttccggcgacgcctggaacgacctgaactccatcgaa
ggaatcggcgagatcgtcgctcgcgccatcgtggagttctacaaggagccgcgcaacgtt
gaggtgatctcggctctgctttcggaagtgacgccgcaggaggcggagcagccggtcacc
tccgggagtccggttgccggcaagacggttgtcttcaccggctcgctggagaagttcacc
cgcgacgaggccaaagccaaagcggagagcctcggcgcaaaggtggcaggctcggtctcc
aagaacaccgatatcgtcgtagccggaccaggcgcgggctcgaagctcgacaaggcacgc
gaactcggcgtccagaccatggacgaggacgggtggctggcgctcatcggtcgttga
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